mgx Namespace Reference

Distributed matrix library. More...

Namespaces
	comp
	ForAll
	Contains all the classes related to the graphs.
	Information

Classes
class	_EmptyEdgeContent
class	ActualPlaneStack
class	AdaptiveSubdivideBorderMesh
class	AdaptiveSubdivideSignalMesh
class	AddNoiseStack
struct	addOP
struct	addToDiagOP
class	AlignCanvas
class	AnalysisDivPlanes
class	AnalyzeCells
class	AnalyzeLeafPrimSurf
class	AnalyzeMeristem
class	AnalyzeSurface
class	AngleTwoPlanes
class	AnimationAddKeyFrame
class	AnimationClear
class	AnimationLoad
class	AnimationPlay
class	AnimationSave
class	AnisotropyCurvature
class	Annihilate
class	ApplyHeat
class	ApplyMaskLabels
class	ApplyMaskToStack
class	ApplyTransferFunction
struct	Arc
	Type of a undirected edge (or arc) More...
class	AreaSelectedTris
class	AssignColumella
class	AssignCorticalCells
class	Attributes
	Holds a set of attributes. More...
class	AttrMap
	Attribute map wraps std::map. More...
class	AutoScaleStack
class	AutoTrim
class	AverageCurvature
struct	AverageKernel
class	AveragePDGs
class	AverageStack
struct	BaseIterator
class	Bezier
class	BezierFromCellFile
class	BezierSurface
class	BezierSurfaceGrowth
class	BezierSurfaceParms
class	BinarizeStack
class	BlobDetect
class	BoundingBox
class	BrightenStack
class	CellAnalysis3D
class	CellAtlas
struct	CellAtlasConfig
struct	CellAtlasData
class	CellAtlasFindCells
struct	CellAtlasPrimordiumData
class	CellAtlasStack
class	CellAxisAngles
class	CellAxisAngles3D
class	CellAxisAttrMapExport
class	CellAxisAttrMapImport
class	CellData
class	CellDivide
struct	CellDivideMgx2d
class	CellDivision
class	CellDivisionAttr
class	CellDivisionMGXM
class	CellGraph3D
class	CellTissue
struct	CellTissueMgx2d
class	CellTissueParms
class	CellTypeRecognitionAllMeasures
class	ChangeVoxelSize
class	CImgGaussianBlurStack
class	CImgLaplaceStack
class	CImgMedianBlurStack
class	CircIterator
class	CleanHeatMap
class	ClearAttrMap
class	ClearCellAxis
class	ClearMainStack
class	ClearMeshSignal
class	ClearWorkStack
class	Clip
class	ClipRegion
class	ClipStack
class	CloseStackLabel
class	ClosingStack
class	CollapseBezier
class	CollapseBezierCellAtlas
class	Color
	A utility class to encapsulate color data. More...
class	Colorbar
class	ColorGradient
class	ColorMap
class	ColorMapProcess
class	Colors
class	CombineAttrMaps
class	CombineStacks
class	ComputeDivPlaneAngles
class	ComputeHeatMap
class	ComputeVolume
class	ConsolidateRegions
class	ConsolidateRegionsNormalized
class	Contour
	Contour utility class. More...
class	ConvertToMgx2d
class	ConvertToMgx3d
class	ConvertToMgxc
class	ConvertToMgxm
class	CopyCustomDirections
class	CopyLabelsToParents
class	CopyMainToWork
class	CopyParentsToLabels
class	CopySwapMeshes
class	CopySwapStacks
class	CopyWorkToMain
class	CorrectLabeling
class	CorrectLabelingStack
class	CorrectParents
class	CorrespondenceJunctions
class	CountSelectedCells
class	CreateAttrMap
class	CreateCustomDirectionsBezier
class	CreateCustomDirectionsBezier3D
class	CreateCustomDirectionsBezierLine
class	CreateCustomDirectionsBezierLine3D
class	CreateCustomDirectionsHeat
class	CreateCustomDirectionsSurface
class	CreateIntrinsicHeat
class	CreateJunctionGraph
class	CreateJunctionGraphStack
class	CreateParentAttr
class	CreatePlaneFromSelectedVtxs
class	Curvature
class	CurvatureMeasure
class	CustomDirectionsAngle
class	CustomDirectionsAngle3D
class	CustomDirectionsClear
class	CustomDirectionsEnforceOrthogonality
class	CutSurf
class	CuttingSurface
class	CuttingSurfMesh
class	DataAnalysis
class	DataAnalysisGUS
class	DataAnalyzer
class	DeleteEdge
class	DeleteHeatRangeLabels
class	DeleteOutsideMesh
class	DetectCellLayers
class	DetectCellLayers2
class	DetectLayers
class	DiffGaussians
struct	DilateKernel
struct	DilateMaskKernel
class	DilateStack
class	DisplayAllPlanes
class	DisplayCellAxisFromTensor
class	DisplayCellData
class	DisplayCellGraph
class	DisplayCellGraph2D
class	DisplayCellGraph3D
class	DisplayCustomOrientations
class	DisplayCustomOrientations3D
class	DisplayFibrilOrientations
class	DisplayFibrilOrientationsVertex
class	DisplayOptimalPlanes
class	DisplayOptimalPlanesSimple
class	DisplayPCA
class	DisplayPCA3D
class	DisplayPCAOld
class	DisplayPDGs
class	DisplayPDGsVertex
class	DisplayShortestPath
class	DisplaySignalOrientation
class	DisplaySignalOrientation3D
class	DisplayTissueCurvature
class	DistanceCells
class	DistanceNuclei
class	DistanceStackToMesh
class	DistEdge
class	DistEdgeAttr
class	DistEdgeGraph
class	DistNhbd
class	DistVertex
class	DistVertexAttr
class	DistVertexGraph
class	DivideCell3DMGX3D
struct	DivisionAnalysisConfig
class	DivisionAnalysisData
class	DivisionAnalysisMulti2D
class	DivisionAnalysisMulti3D
class	DivisionAnalysisMulti3DOld
class	DivisionDataNew
struct	DivisionParms
class	DivisionPlane
class	DivisionPlaneHeat
struct	DivPlane
class	DMatrix
class	DVector
class	Edge
class	EdgeData
class	EdgeDetectProcess
class	EditMarkersDlg
class	EraseAtBorderStack
struct	ErodeKernel
struct	ErodeLabelsKernel
struct	ErodeMaskKernel
class	ErodeStack
class	ExamineBadVasculature
class	ExplodeMesh
class	ExportInternalAngles
class	ExportJunctionAngles
class	ExportJunctionAnglesNew
class	ExportPlaneData
class	ExtendByConnectivity
class	ExtendCells
class	ExtendSelectionByNeighbors
class	FibrilOrientations
class	FibrilOrientationsVertex
struct	FileDataType
struct	FileEFactorDataType
class	FileListWidget
class	FillHolesProcess
class	FillLabelStack
class	FillStack3D
class	FillStackToMesh
class	FilterPlanes
class	FilterStack
class	FindCellWallCenters
class	FixBorderTriangles
class	FixMeshCorners
class	FlatDivisionPlane
class	FlatDivisionPlane2D
class	FlatDivisionPlane3D
class	FlipBezierLine
class	Function
	A utility class for functions. More...
class	GaussianBlurStack
class	GaussianCurvature
class	GLSLValue
class	GrabLabelsSegment
class	GrowthAnalysis3D
class	GrowthDirections
class	Guard
class	HeatAndChangeMap
class	HeatMapAllMeasures2D
class	HeatMapAreaAsymmetry
class	HeatMapCellType
struct	heatMapDataStructure
class	HeatMapGrowth
class	HeatMapProliferation
class	HeatMapSmooth
class	HejnowiczInitialCell
class	HejnowiczSurface
class	HejnowiczSurfaceGrowth
class	HejnowiczSurfaceParms
struct	HoldMem
struct	Image3D
class	ImgData
class	ImplicitFunction
class	ImportCustomDirections
class	ImportCustomDirectionsVector
class	ImportParentAttr
class	ImportParentAttrNew
class	Insert
	Insert a new vertex on an edge. More...
class	InvertStack
struct	jacobiPreCondOP
class	JoinCellsMGX3D
class	JoinRegionsSegment
class	JunctionDistance
struct	JunctionInformation
class	LabelCellWalls
class	LabelledStackComparison
class	LabelMeristem
class	LabelNuclei
class	LabelSelected
struct	limits
class	Load3DFrom2View
class	LoadAllData
class	LoadBezier
class	LoadCellAxis
class	LoadCellData
class	LoadCellTypes
class	LoadHeatMap
class	LoadParents
class	LoadPlyFileCellGraph
class	LoadTransform
class	LoadViewFile
class	LocalMaximaStack
class	LoopSubdivisionMesh
class	MakeMeshCircleDA
class	MakeMeshTetraDA
class	ManageAttributes
class	MarchingCube3D
class	MarchingCubeSurface
class	MarkerColorDelegate
class	MarkMeristem
class	MarkPrim
struct	MaskKernel
class	Materials
	A utility class for materials. More...
class	Matrix
struct	maxElementOP
class	MaximalAbsCurvature
class	MaximalCurvature
class	Measure3DCellCoord
class	Measure3DCellDistance
class	Measure3DCellDistanceBezierRing
class	Measure3DCoordCirc
class	Measure3DCoordLong
class	Measure3DCoordRad
class	Measure3DDistanceToMesh
class	Measure3DNeighbors
class	Measure3DOutsideWallArea
class	Measure3DOutsideWallAreaPercent
class	Measure3DSizeCirc
class	Measure3DSizeCustom
class	Measure3DSizeLong
class	Measure3DSizeRad
class	Measure3DSizeX
class	Measure3DSizeY
class	Measure3DSizeZ
class	Measure3DVolume
class	Measure3DVolumeSurfaceRatio
class	Measure3DWallArea
class	MeasureArea
class	MeasureAspectRatio
class	MeasureAvgRadius
class	MeasureBending
class	MeasureBetweenessCentrality
class	MeasureBetweenessCentrality3D
class	MeasureBetweenessCurrentFlow
class	MeasureBetweenessCurrentFlow3D
class	MeasureBezier
class	MeasureBezierCoord
class	MeasureBezierExport
class	MeasureBezierLineCoord
class	MeasureBezierLineCoord3D
class	MeasureCellCoord
class	MeasureCellDistance
class	MeasureCommonNhbrs
class	MeasureDistanceToBezier
class	MeasureDistanceToBezier3D
class	MeasureDistanceToBezierPlane3D
class	MeasureDistanceToMesh
class	MeasureMajorAxis
class	MeasureMajorAxisTheta
class	MeasureMaxRadius
class	MeasureMinorAxis
class	MeasureMinRadius
class	MeasureNeighborhoodArea
class	MeasureNeighborhoodAspectRatio
class	MeasureNeighborhoodNeighbors
class	MeasureNeighborhoodPerimeter
class	MeasureNeighborhoodVariabilityRadius
class	MeasureNeighbors
class	MeasurePerimeter
class	MeasurePolarCoord
class	MeasureSignal
class	MeasureSignalBorder
class	MeasureSignalInterior
class	MeasureSignalTotal
class	MeasureStomataArea
class	MeasureStomatalBending
class	MeasureVariabilityRadius
struct	MedianKernel
class	MedianOfMediansStack
	Sepearable median-of-medians approximation to median filter. More...
class	MedianStack
	Uses quickselect to compute the local median of each voxel of the stack. More...
class	MeinhardtAI
class	MergeCellsMGXM3D
class	MergeParentFiles
class	MergeStacks
class	MergeVertices
class	Mesh
class	MeshAddOtherMesh
class	MeshAutoSegment
class	MeshBrightness
class	MeshBuilder
class	MeshCircularHistogram
class	MeshClosing
class	MeshCombineRegions
class	MeshDeleteSelection
class	MeshDeleteValence
class	MeshDiffGaussians
class	MeshDilation
class	MeshDilationOp
class	MeshErosion
class	MeshErosionOp
class	MeshExport
class	MeshFromLocalMaxima
class	MeshGaussianBlur
class	MeshGaussianBlurOp
class	MeshImport
class	MeshInvertSelection
class	MeshKeepVertices
class	MeshLabelDilation
class	MeshLabelDilationOp
class	MeshLabelErosion
class	MeshLabelErosionOp
class	MeshLoad
class	MeshLocalMinima
class	MeshLocalMinimaOp
class	MeshNormalize
	\claass MeshNormalize ProcessSignal.hpp <MeshProcessSignal.hpp> More...
class	MeshNormalizeOp
class	MeshOpening
class	MeshRelabel
class	MeshSave
class	MeshSelectAll
class	MeshSelectBadNormals
class	MeshSelectClip
class	MeshSelectDuplicateCells
class	MeshSelectLabeled
class	MeshSelectLabels
class	MeshSelectNewWalls
class	MeshSelectUnlabeled
class	MeshSelectValence
class	MeshSelectWholeLabelExtend
class	MeshSignalGrad
class	MeshSignalGradOp
class	MeshUnselect
class	MeshUnselectLabel
struct	mgx_Factory
struct	mgx_Factory_Python
struct	mgx_Process
struct	mgx_Process_Python
class	MGXSubdivide
struct	minElementOP
class	MinimalAbsCurvature
class	MinimalCurvature
class	MMAddOp
class	MMSubOp
class	MSAddOp
class	MSMultOp
struct	multCompOP
class	multiset_vector
struct	multMVOP
struct	multVSOP
class	MVMultOp
class	NewBezier
class	NewBezierRing
class	NewBezierRingFromSelected
class	NewWalls
struct	NhbdGraphInfo
struct	nonSepIter
class	NormalizeHeatMap
class	NormalizeStack
class	OMPGuard
	This is a class for guard objects using OpenMP It is adapted from the book "Pattern-Oriented Software Architecture". More...
class	OpeningStack
class	OpenStackLabel
class	OrganDivisionSimulation
class	OutsideCellWall
class	Parms
	A utility class to parse L-Studio like parameter files. More...
class	PCA
class	PCAnalysis
class	PCAnalysis2D
class	PCAnalysis3D
struct	PlyCellData
class	PlyFile
struct	PlyWallData
class	PolarSurface
class	PolarSurfaceGrowth
class	PolarSurfaceParms
class	Polygonizer
struct	primDataStructure
class	Process
struct	ProcessDefinition
class	ProcessDocsDialog
class	processOP
class	ProcessParms
class	ProcessThread
class	Progress
class	ProjectCurvature
class	ProjectCurvatureOp
class	ProjectCustomDirections
class	ProjectLabel
class	ProjectLabelsOnMesh
class	ProjectLeafPrimStack
class	ProjectSignal
class	PythonProcess
class	QTransferFunctionViewer
class	Quaternion
class	QuickSaveFile
class	refpair
class	RelabelCells3D
class	RelabelFragments
struct	remove_pointer
struct	remove_pointer< T * >
class	RescaleHeatMap
class	RescaleSignal
class	ResetCellTypes
class	ResetDivPlaneData
class	ResetMeshProcess
class	ResetParents
class	ResizeCanvas
class	RestoreCellLabels
class	RestoreOriginalMesh
class	ReverseMesh
class	ReverseStack
class	RootCellAnalyzing
class	RootCellProcessing
struct	rootDataStructure
struct	RootDivData
class	RootDivisionAnalysis
class	RootSumSquareCurvature
class	RotateCamera
class	RunAllParentHeat
class	SaveAttributesCSV
class	SaveAttributesCSVExtended
class	SaveBezier
class	SaveCellAxis
class	SaveCellContourFile
class	SaveCellData
class	SaveCellTypes
class	SaveGlobalTransform
class	SaveHeatMap
class	SaveNeighborhoodData
class	SaveNeighborhoodData2D
class	SaveParents
class	SavePlyFile
class	SaveTransform
class	SaveViewFile
struct	saxpyOP
class	ScaleBar
class	ScaleHeatMap
	Clear label to parent mapping. More...
class	ScaleMesh
class	ScaleStack
class	SegmentClear
class	SegmentMesh
class	SelectBadCells
class	SelectByHeat
class	SelectByNormal
class	SelectCellType
class	SelectDuplicatedNuclei
class	SelectMemberIterator
	Iterate over a container of structure, dereferencing only a member of it. More...
struct	SelectMemberPointerIterator
class	SelectParentLabel
class	SelectParentLabelsT1
class	SelectSharedTriangles
class	SelectShortWalls
class	SelectSpecial
class	SelectVerticesOfCell
struct	sepIterX
struct	sepIterY
struct	sepIterZ
class	set_vector
class	SetCellType
class	SetCurrentStack
class	SetDivisionPoint
class	SetParent
class	SetParentExploded
class	SetSignalProcess
class	Shader
class	SharpenStack
class	ShiftStack
class	ShrinkMesh
class	SignalOrientation
class	SignalOrientation3D
class	SignedAverageAbsCurvature
class	SmoothCustomDirections
class	SmoothMesh
class	SmoothMeshSignal
class	Solver
class	SolverParms
struct	SortResultData
class	SplitEdges
class	Stack
class	StackBorderFromSegmented
class	StackCircularHistogram
class	StackExport
class	StackExportByLabel
class	StackHistogramBezier
class	StackImport
class	StackMeshProcess
class	StackOpen
class	StackOpenSaveFolder
class	StackRelabel
class	StackRelabelFromMesh
class	StackSave
class	StackSwapBytes
class	StackVoxelCount
class	StatsTriangleValues
class	Store
class	Subdivide
class	SubdivideBisectMesh
class	SubdivideBisectMesh3D
class	SubdivideMesh
class	SumSquareCurvature
class	Surface
class	SurfaceAnalyzeBezierLine
class	SurfaceFromMGX3D
class	SwapStacks
class	SwitchHeatParent
class	SymmetricTensor
class	TakeSnapshot
class	TestDivisionPlanes
class	TestDivisionPlanes2D
class	TestDivisionPlanes3D
class	TestDivisionPlanesCellAtlas
class	ThresholdLabelDelete
class	TissueCurvature
class	TopHatStack
class	TopologicalCheck
class	TransferFunction
class	TransferFunctionDlg
class	TransferMarkerModel
class	TransformMesh
class	TranslateByParent
struct	Triangle
	class Triangle Triangle.hpp <Triangle.hpp> More...
class	TrimStackProcess
class	TrimStackToBezier
class	UniformGrowth
class	UniformInitialCell
class	UniqueParentsFromAttr
class	UserCancelException
class	Vector
	Namespace containing all the utility classes. More...
class	Vertex
class	VertexData
class	ViewMeshProcess
class	VoxelFaceMesh
class	VSaxpyOp
class	VSMultOp
class	VVAddOp
class	VVGraph
class	VVSubOp
class	WallData
class	WatershedStack
class	WriteGrowthMapData

Typedefs
typedef Vector< 2, Colorb >	Vec2Colorb
typedef Vector< 3, Colorb >	Vec3Colorb
typedef AttrMap< int, int >	IntIntAttr
typedef AttrMap< int, float >	IntFloatAttr
typedef AttrMap< int, Point3f >	IntPoint3fAttr
typedef AttrMap< int, Colorb >	IntColorbAttr
typedef AttrMap< int, Vec2Colorb >	IntVec2ColorbAttr
typedef AttrMap< int, Vec3Colorb >	IntVec3ColorbAttr
typedef AttrMap< int, Matrix3f >	IntMatrix3fAttr
typedef AttrMap< int, SymmetricTensor >	IntSymTensorAttr
typedef AttrMap< int, QString >	IntQStringAttr
typedef AttrMap< IntIntPair, float >	IntIntFloatAttr
typedef AttrMap< IntIntPair, Point3f >	IntIntPoint3fAttr
typedef AttrMap< vertex, int >	VtxIntAttr
typedef AttrMap< vertex, bool >	VtxBoolAttr
typedef AttrMap< vertex, float >	VtxFloatAttr
typedef AttrMap< vertex, Point2f >	VtxPoint2fAttr
typedef AttrMap< vertex, Point3f >	VtxPoint3fAttr
typedef AttrMap< vertex, Colorb >	VtxColorbAttr
typedef AttrMap< vertex, Vec2Colorb >	VtxVec2ColorbAttr
typedef AttrMap< vertex, Vec3Colorb >	VtxVec3ColorbAttr
typedef AttrMap< vertex, Matrix3f >	VtxMatrix3fAttr
typedef AttrMap< vertex, SymmetricTensor >	VtxSymTensorAttr
typedef AttrMap< vertex, QString >	VtxQStringAttr
typedef AttrMap< edge, int >	EdgeIntAttr
typedef AttrMap< edge, bool >	EdgeBoolAttr
typedef AttrMap< edge, float >	EdgeFloatAttr
typedef AttrMap< edge, Point2f >	EdgePoint2fAttr
typedef AttrMap< edge, Point3f >	EdgePoint3fAttr
typedef AttrMap< edge, Colorb >	EdgeColorbAttr
typedef AttrMap< edge, Vec2Colorb >	EdgeVec2ColorbAttr
typedef AttrMap< edge, Vec3Colorb >	EdgeVec3ColorbAttr
typedef AttrMap< edge, Matrix3f >	EdgeMatrix3fAttr
typedef AttrMap< edge, SymmetricTensor >	EdgeSymTensorAttr
typedef AttrMap< edge, QString >	EdgeQStringAttr
typedef AttrMap< cell, int >	CellIntAttr
typedef AttrMap< cell, bool >	CellBoolAttr
typedef AttrMap< cell, float >	CellFloatAttr
typedef AttrMap< cell, Point2f >	CellPoint2fAttr
typedef AttrMap< cell, Point3f >	CellPoint3fAttr
typedef AttrMap< cell, Colorb >	CellColorbAttr
typedef AttrMap< cell, Vec2Colorb >	CellVec2ColorbAttr
typedef AttrMap< cell, Vec3Colorb >	CellVec3ColorbAttr
typedef AttrMap< cell, Matrix3f >	CellMatrix3fAttr
typedef AttrMap< cell, SymmetricTensor >	CellSymTensorAttr
typedef AttrMap< cell, QString >	CellQStringAttr
typedef AttrMap< wall, int >	WallIntAttr
typedef AttrMap< wall, bool >	WallBoolAttr
typedef AttrMap< wall, float >	WallFloatAttr
typedef AttrMap< wall, Point2f >	WallPoint2fAttr
typedef AttrMap< wall, Point3f >	WallPoint3fAttr
typedef AttrMap< wall, Colorb >	WallColorbAttr
typedef AttrMap< wall, Vec2Colorb >	WallVec2ColorbAttr
typedef AttrMap< wall, Vec3Colorb >	WallVec3ColorbAttr
typedef AttrMap< wall, Matrix3f >	WallMatrix3fAttr
typedef AttrMap< wall, SymmetricTensor >	WallSymTensorAttr
typedef AttrMap< wall, QString >	WallQStringAttr
typedef AttrMap< Triangle, int >	TriIntAttr
typedef AttrMap< Triangle, bool >	TriBoolAttr
typedef AttrMap< Triangle, float >	TriFloatAttr
typedef AttrMap< Triangle, Point2f >	TriPoint2fAttr
typedef AttrMap< Triangle, Point3f >	TriPoint3fAttr
typedef AttrMap< Triangle, Colorb >	TriColorbAttr
typedef AttrMap< Triangle, Vec2Colorb >	TriVec2ColorbAttr
typedef AttrMap< Triangle, Vec3Colorb >	TriVec3ColorbAttr
typedef AttrMap< Triangle, Matrix3f >	TriMatrix3fAttr
typedef AttrMap< Triangle, SymmetricTensor >	TriSymTensorAttr
typedef AttrMap< Triangle, QString >	TriQStringAttr
typedef AttrMap< QString, int >	QStringIntAttr
typedef AttrMap< QString, float >	QStringFloatAttr
typedef AttrMap< QString, Point3f >	QStringPoint3fAttr
typedef AttrMap< QString, Colorb >	QStringColorbAttr
typedef AttrMap< QString, Vec2Colorb >	QStringVec2ColorbAttr
typedef AttrMap< QString, Vec3Colorb >	QStringVec3ColorbAttr
typedef AttrMap< QString, Matrix3f >	QStringMatrix3fAttr
typedef AttrMap< QString, SymmetricTensor >	QStringSymTensorAttr
typedef AttrMap< QString, QString >	QStringQStringAttr
typedef Color< float >	Color3f
typedef Color< float >	Colorf
typedef Color< uchar >	Colorb
typedef std::vector< Colorb >	ColorbVec
typedef Vector< 2, float >	Point2f
typedef Vector< 4, float >	Point4f
typedef thrust::device_ptr< int >	DevicePi
typedef thrust::device_ptr< uint >	DevicePui
typedef thrust::device_ptr< double >	DevicePd
typedef thrust::device_ptr< Point3d >	DeviceP3d
typedef thrust::device_ptr< Matrix3d >	DevicePM3d
typedef thrust::counting_iterator< int, thrust::device_space_tag >	DCountIter
typedef thrust::host_vector< uint >	HVecU
typedef thrust::host_vector< ushort >	HVecUS
typedef thrust::host_vector< float >	HVecF
typedef thrust::host_vector< Point3u >	HVec3U
typedef thrust::host_vector< Point3f >	HVec3F
typedef thrust::host_vector< Point4f >	HVec4F
typedef Vector< 2, int >	Point2i
typedef Vector< 3, float >	Point3f
typedef intptr_t	edge_identity_t
	Type of the identifier of an edge. More...
typedef unsigned char	ubyte
	This filee contains different useful geometry algorithms, like intersections, areas, ... More...
typedef unsigned char	uchar
typedef unsigned int	uint
typedef unsigned short	ushort
	Simpler names for the various containers and iterators. More...
typedef unsigned long	ulong
typedef SymmetricTensor	SymmetricTensor
typedef Vector< 5, float >	Point5f
typedef Vector< 6, float >	Point6f
typedef Vector< 12, float >	Point12f
typedef Vector< 1, double >	Point1d
typedef Vector< 2, double >	Point2d
typedef Vector< 3, double >	Point3d
typedef Vector< 4, double >	Point4d
typedef Vector< 5, double >	Point5d
typedef Vector< 6, double >	Point6d
typedef Vector< 8, double >	Point8d
typedef Vector< 9, double >	Point9d
typedef Vector< 12, double >	Point12d
typedef Vector< 16, double >	Point16d
typedef Vector< 18, double >	Point18d
typedef Vector< 3, int >	Point3i
typedef Vector< 4, int >	Point4i
typedef Vector< 5, int >	Point5i
typedef Vector< 6, int >	Point6i
typedef Vector< 1, uint >	Point1u
typedef Vector< 2, uint >	Point2u
typedef Vector< 3, uint >	Point3u
typedef Vector< 4, uint >	Point4u
typedef Vector< 5, uint >	Point5u
typedef Vector< 6, uint >	Point6u
typedef Vector< 12, uint >	Point12u
typedef Vector< 30, uint >	Point30u
typedef Vector< 3, ushort >	Point3us
typedef Vector< 3, ulong >	Point3ul
typedef Vector< 2, size_t >	Point2s
typedef Vector< 3, size_t >	Point3s
typedef Vector< 4, size_t >	Point4s
typedef Vector< 5, size_t >	Point5s
typedef Vector< 6, size_t >	Point6s
typedef Vector< 3, uchar >	Point3uc
typedef Matrix< 2, 2, float >	Matrix2f
typedef Matrix< 3, 3, float >	Matrix3f
typedef Matrix< 4, 4, float >	Matrix4f
typedef Matrix< 2, 2, uint >	Matrix2u
typedef Matrix< 3, 3, uint >	Matrix3u
typedef Matrix< 4, 4, uint >	Matrix4u
typedef Matrix< 4, 3, uint >	Matrix4x3u
typedef Matrix< 6, 3, uint >	Matrix6x3u
typedef Matrix< 1, 1, double >	Matrix1d
typedef Matrix< 2, 2, double >	Matrix2d
typedef Matrix< 2, 3, double >	Matrix2x3d
typedef Matrix< 2, 6, double >	Matrix2x6d
typedef Matrix< 3, 2, double >	Matrix3x2d
typedef Matrix< 3, 3, double >	Matrix3d
typedef Matrix< 3, 4, double >	Matrix3x4d
typedef Matrix< 3, 6, double >	Matrix3x6d
typedef Matrix< 3, 12, double >	Matrix3x12d
typedef Matrix< 3, 18, double >	Matrix3x18d
typedef Matrix< 4, 2, double >	Matrix4x2d
typedef Matrix< 4, 3, double >	Matrix4x3d
typedef Matrix< 4, 4, double >	Matrix4d
typedef Matrix< 4, 6, double >	Matrix4x6d
typedef Matrix< 5, 3, double >	Matrix5x3d
typedef Matrix< 6, 6, double >	Matrix6d
typedef Matrix< 6, 3, double >	Matrix6x3d
typedef Matrix< 6, 12, double >	Matrix6x12d
typedef Matrix< 6, 18, double >	Matrix6x18d
typedef Matrix< 9, 3, double >	Matrix9x3d
typedef Matrix< 9, 9, double >	Matrix9d
typedef Matrix< 9, 18, double >	Matrix9x18d
typedef Matrix< 12, 3, double >	Matrix12x3d
typedef Matrix< 12, 12, double >	Matrix12d
typedef Matrix< 18, 18, double >	Matrix18d
typedef BoundingBox< 3, uint >	BoundingBox3u
typedef BoundingBox< 3, int >	BoundingBox3i
typedef BoundingBox< 3, float >	BoundingBox3f
typedef QOpenGLFunctions_3_0	MGXOpenGLFunctions
typedef std::pair< int, int >	IntInt
typedef std::pair< IntInt, double >	IntIntDouble
typedef std::pair< IntInt, double >	IntIntDouPair
typedef std::vector< Triangle >	triVector
typedef std::map< Point3i, std::set< int > >	Point3iIntSetMap
	calculate properties of the neighborhood of a vvGraph such as: cell wall area, shared wall areas, nr of cells of a vertex and individual wall labels More...
typedef std::pair< Point3i, std::set< int > >	Point3iIntSetPair
typedef Vector< 4, vertex >	Point4v
typedef Vector< 3, GLubyte >	Point3GLub
typedef std::unordered_map< int, HVec3U >	IntHVec3uMap
	Map of an integer to a host vector of 3 unsigned integers. More...
typedef std::pair< int, HVec3U >	IntHVec3uPair
	Element in IntHVec3uMap. More...
typedef std::map< int, Point3d >	IntP3dMap
typedef std::map< Point2i, Point3d >	P2iP3dMap
typedef std::pair< vertex, vertex >	VertexPr
typedef std::set< vertex >	Set
typedef std::pair< VertexPr, Set >	VertexPrSet
typedef std::unordered_map< vertex, std::set< int > >	JunctionCellsMap
typedef std::unordered_map< int, std::set< vertex > >	CellJunctionsMap
typedef std::unordered_map< int, std::vector< vertex > >	CellJunctionsInOrderMap
typedef std::pair< vertex, std::set< int > >	VertLabelsP
typedef std::pair< int, std::set< vertex > >	CellJunctionsP
typedef std::pair< int, std::vector< vertex > >	CellJunctionsInOrderP
typedef std::map< int, HVec3U >	IntHVec3UMap
typedef VVGraph< VertexData, EdgeData >	vvGraph
	Simpler names for the various containers and iterators related to vertices and VV. More...
typedef vvGraph::vertex_t	vertex
	Type of a vertex. More...
typedef vvGraph::edge_t	edge
	Type of an edge. More...
typedef Vector< 3, GLuint >	Point3GLui
typedef Vector< 4, GLuint >	Point4GLui
typedef Vector< 4, GLubyte >	Point4GLub
typedef std::vector< Quaternion >	QuaternionVec
typedef QList< QStringList >	ParmChoiceList
	Type of the dictionary giving the list of possible strings for each argument. More...
typedef Vector< 1, GLint >	ivec1
typedef Vector< 2, GLint >	ivec2
typedef Vector< 3, GLint >	ivec3
typedef Vector< 4, GLint >	ivec4
typedef Vector< 1, GLfloat >	vec1
typedef Vector< 2, GLfloat >	vec2
typedef Vector< 3, GLfloat >	vec3
typedef Vector< 4, GLfloat >	vec4
typedef Matrix< 2, 2, GLfloat >	mat2
typedef Matrix< 3, 3, GLfloat >	mat3
typedef Matrix< 4, 4, GLfloat >	mat4
typedef DistNhbd< cellGraph >	DistNhbdC
typedef DVector< DistNhbdC, Matrix2d, Point2d, double >	DVector2d
typedef DMatrix< DistNhbdC, Matrix2d, Point2d, double >	DMatrix2d
typedef thrust::host_vector< Matrix2d >	DVM2f
typedef std::vector< Matrix2d >	HVM2f
typedef thrust::host_vector< bool >	HostVbool
typedef thrust::host_vector< ushort >	HostVus
typedef thrust::host_vector< Point2i >	HostV2i
typedef thrust::host_vector< uint >	HostVu
typedef thrust::host_vector< Point1u >	HostV1u
typedef thrust::host_vector< Point2u >	HostV2u
typedef thrust::host_vector< Point3u >	HostV3u
typedef thrust::host_vector< Point4u >	HostV4u
typedef thrust::host_vector< Point6u >	HostV6u
typedef thrust::host_vector< Point12u >	HostV12u
typedef thrust::host_vector< Point30u >	HostV30u
typedef thrust::host_vector< float >	HostVf
typedef thrust::host_vector< Point3f >	HostV3f
typedef thrust::host_vector< Point4f >	HostV4f
typedef thrust::host_vector< double >	HostVd
typedef thrust::host_vector< Point1d >	HostV1d
typedef thrust::host_vector< Point2d >	HostV2d
typedef thrust::host_vector< Point3d >	HostV3d
typedef thrust::host_vector< Point4d >	HostV4d
typedef thrust::host_vector< Point6d >	HostV6d
typedef thrust::host_vector< Point9d >	HostV9d
typedef thrust::host_vector< Matrix1d >	HostVM1d
typedef thrust::host_vector< Matrix2d >	HostVM2d
typedef thrust::host_vector< Matrix3d >	HostVM3d
typedef thrust::host_vector< Matrix6x3d >	HostVM6x3d
typedef thrust::device_vector< bool >	DeviceVbool
typedef thrust::device_vector< ushort >	DeviceVus
typedef thrust::device_vector< Point2i >	DeviceV2i
typedef thrust::device_vector< uint >	DeviceVu
typedef thrust::device_vector< Point1u >	DeviceV1u
typedef thrust::device_vector< Point2u >	DeviceV2u
typedef thrust::device_vector< Point3u >	DeviceV3u
typedef thrust::device_vector< Point4u >	DeviceV4u
typedef thrust::device_vector< Point6u >	DeviceV6u
typedef thrust::device_vector< Point12u >	DeviceV12u
typedef thrust::device_vector< Point30u >	DeviceV30u
typedef thrust::device_vector< float >	DeviceVf
typedef thrust::device_vector< Point3f >	DeviceV3f
typedef thrust::device_vector< Point4f >	DeviceV4f
typedef thrust::device_vector< double >	DeviceVd
typedef thrust::device_vector< Point1d >	DeviceV1d
typedef thrust::device_vector< Point2d >	DeviceV2d
typedef thrust::device_vector< Point3d >	DeviceV3d
typedef thrust::device_vector< Point4d >	DeviceV4d
typedef thrust::device_vector< Point6d >	DeviceV6d
typedef thrust::device_vector< Point9d >	DeviceV9d
typedef thrust::device_vector< Matrix1d >	DeviceVM1d
typedef thrust::device_vector< Matrix2d >	DeviceVM2d
typedef thrust::device_vector< Matrix3d >	DeviceVM3d
typedef thrust::device_vector< Matrix6x3d >	DeviceVM6x3d
typedef std::unordered_map< Triangle, SymmetricTensor >	TriSymTensorMap
	Map a triangle to a symmetric tensor. More...
typedef std::pair< Triangle, SymmetricTensor >	TriSymTensorPair
	Element in TriSymTensorMap. More...
typedef Vector< 3, bool >	Point3b
typedef std::unordered_map< int, float >	IntFloatMap
	Map of an integer to a float. More...
typedef std::pair< int, float >	IntFloatPair
	Element in IntFloatMap. More...
typedef std::unordered_map< int, Point3f >	IntPoint3fMap
	Map of an integer to a 3D point. More...
typedef std::pair< int, Point3f >	IntPoint3fPair
	Element in IntPoint3fMap. More...
typedef std::map< Point3d, int >	Point3dIntMap
	Map of Point3d to int. More...
typedef std::pair< Point3d, int >	Point3dIntPair
	Element in Point3dIntMap. More...
typedef std::unordered_map< int, double >	IntDoubleMap
	Map of an integer to a double. More...
typedef std::pair< int, double >	IntDoublePair
	Element in IntDoubleMap. More...
typedef std::unordered_map< int, Point3d >	IntPoint3dMap
	Map of an integer to a double 3D point. More...
typedef std::pair< int, Point3d >	IntPoint3dPair
	Element in IntPoint3dMap. More...
typedef std::unordered_map< int, int >	IntIntMap
	Map of an integer to another one. More...
typedef std::pair< int, int >	IntIntPair
	Element in IntIntMap. More...
typedef std::set< intptr_t >	VIdSet
	Set of vertex ids. More...
typedef std::map< int, VIdSet >	IntVIdSetMap
	Map of an integer to a set of vertex ids. More...
typedef std::pair< int, VIdSet >	IntVIdSetPair
	Element in IntVIdSetMap. More...
typedef std::set< int >	IntSet
	Set of integers. More...
typedef std::vector< int >	IntVec
	Vector of integers. More...
typedef std::vector< float >	FloatVec
	Vector of floats. More...
typedef std::vector< Point2f >	Point2fVec
	Vector of Point2f. More...
typedef std::pair< int, IntSet >	IntIntSetPair
	Element in IntIntSetMap. More...
typedef std::map< int, IntSet >	IntIntSetMap
	Map of an integer to a set of integers. More...
typedef std::pair< IntIntPair, VIdSet >	IntIntVIdSetPair
	Element in IntIntVIdSetMap. More...
typedef std::pair< IntIntPair, float >	IntIntFloatPair
	Element in IntIntFloatMap. More...
typedef std::unordered_map< IntIntPair, float >	IntIntFloatMap
	Map of a pair of integers to a float. More...
typedef std::map< IntIntPair, VIdSet >	IntIntVIdSetMap
	Map of a pair of integers to a set of vertex ids. More...
typedef std::unordered_map< int, Matrix3f >	IntMatrix3fMap
	Map of an integer to a 3x3 matrix. More...
typedef std::pair< int, Matrix3f >	IntMatrix3fPair
	Element in IntMatrix3x3fMap. More...
typedef std::unordered_map< int, SymmetricTensor >	IntSymTensorMap
	Map an integer to a symmetric tensor. More...
typedef std::pair< int, SymmetricTensor >	IntSymTensorPair
	Element in IntSymTensorMap. More...
typedef VVGraph< mgx::CellData, mgx::WallData >	cellGraph
	Type of the cell graph. More...
typedef cellGraph::vertex_t	cell
	Type of a vertex. More...
typedef cellGraph::edge_t	wall
	Type of an edge. More...
typedef std::unordered_set< cell >	CellSet
	Set of cells. More...
typedef std::vector< cell >	CellVec
	Vector of cells. More...
typedef std::set< vertex >	VtxSet
	Set of vertices. More...
typedef std::set< uint >	UIntSet
	Used with vertex ids. More...
typedef std::vector< vertex >	VtxVec
	Vector of vertices. More...
typedef std::vector< vvGraph >	VVGraphVec
	Vector of vvGraphs. More...
typedef std::pair< int, vvGraph >	IntVVGraphPair
	Integer, VVGraph pair. More...
typedef std::vector< vvGraph * >	vvGraphVec
	Vector of vvGraphs. More...
typedef std::unordered_map< int, vvGraph >	IntVVGraphMap
	Map of an integer to a vvGraph. More...
typedef std::unordered_map< int, vertex >	IntVtxMap
	Int to vertex map. More...
typedef std::pair< int, vertex >	IntVtxPair
typedef std::unordered_map< vertex, vertex >	VtxVtxMap
	Map of vertex to vertex. More...
typedef std::pair< vertex, vertex >	VtxVtxPair
typedef std::unordered_map< vertex, cell >	VtxCellMap
	Map of vertex to cell. More...
typedef std::unordered_map< vertex, int >	VtxIntMap
	Map of vertex to int. More...
typedef std::unordered_map< vertex, bool >	VtxBoolMap
	Map of vertex to bool. More...
typedef std::unordered_map< vertex, float >	VtxFloatMap
	Map of vertex to float. More...
typedef std::unordered_map< vertex, Point2f >	VtxPoint2fMap
	Map of vertex to Point2f. More...
typedef std::unordered_map< vertex, Point2d >	VtxPoint2dMap
	Map of vertex to Point2d. More...
typedef std::unordered_map< vertex, Point3f >	VtxPoint3fMap
	Map of vertex to Point3f. More...
typedef std::unordered_map< vertex, Point3d >	VtxPoint3dMap
	Map of vertex to Point3d. More...
typedef std::unordered_map< vertex, Matrix3f >	VtxMatrix3fMap
	Map of vertex to Matrix3f. More...
typedef std::unordered_map< int, cellGraph >	IntCellGraphMap
	Map of an integer to a cellGraph. More...
typedef std::unordered_map< cell, cell >	CellCellMap
	Map of cell to cell. More...
typedef std::pair< cell, cell >	CellCellPair
typedef std::unordered_map< int, cell >	IntCellMap
	Int to cell map. More...
typedef std::unordered_map< cell, int >	CellIntMap
	Map of cell to int. More...
typedef std::unordered_map< cell, bool >	CellBoolMap
	Map of cell to bool. More...
typedef std::unordered_map< cell, float >	CellFloatMap
	Map of cell to float. More...
typedef std::unordered_map< cell, Point2f >	CellPoint2fMap
	Map of cell to Point2f. More...
typedef std::unordered_map< cell, Point3f >	CellPoint3fMap
	Map of cell to Point3f. More...
typedef std::unordered_map< cell, Matrix3f >	CellMatrix3fMap
	Map of cell to Matrix3f. More...
typedef intptr_t	vertex_identity_t
	Type of the identifier of a vertex. More...
typedef std::map< int, std::vector< vertex > >	labelVertexMap
typedef std::pair< int, std::vector< vertex > >	labelVertexVecPair
typedef std::map< int, std::map< int, double > >	cellMorphLandscape
typedef std::map< int, std::vector< int > >	intToVec
typedef std::map< Point2i, double >	P2iDMap
typedef std::pair< Point2i, double >	P2iDPair
typedef std::vector< SortResultData >	SortResultVector
typedef std::vector< SortResultVector >	SortResultVectorAll
typedef std::vector< FileDataType >	FileDataVector
typedef std::vector< FileEFactorDataType >	FileEFactorDataVector
typedef Vector< 2, int >	Vec2i
typedef std::vector< Vec2i >	tagTypeVector
typedef std::map< int, FileDataVector >	tagDataMap
typedef std::vector< QString >	FilenameVector
typedef AttrMap< int, CellAtlasData >	CellAtlasAttr
typedef AttrMap< int, CellAtlasConfig >	CellAtlasConfigAttr
typedef std::pair< vertex, vertex >	VtxVtx
typedef std::pair< Point3d, double >	P3dDouble
typedef std::pair< cell, double >	VtxDouble
typedef std::pair< std::set< cell >, std::set< cell > >	CellSetPair
typedef std::pair< cell, cell >	cCPair
typedef std::pair< Point3d, bool >	P3dboolPair
typedef std::pair< cell, double >	cellDPair
typedef std::pair< Point3d, int >	P3dInt
typedef std::pair< P3dDouble, double >	P3dDD
typedef std::pair< Point3d, Point3d >	P3dP3d
typedef std::pair< VtxVtx, vertex >	Tri
typedef std::pair< VtxVtx, vertex >	Vtxvtxp
typedef std::pair< vertex, int >	VtxInt
typedef pair< Triangle, int >	TriInt
typedef std::pair< Point3d, Point3d >	PlaneNrmlPoint

Enumerations
enum	DimEnum {   X, Y, Z, XY,   YZ, XZ, XYZ }
enum	UNIFORM_TYPE {   UNIFORM_INT, UNIFORM_INT2, UNIFORM_INT3, UNIFORM_INT4,   UNIFORM_FLOAT, UNIFORM_FLOAT2, UNIFORM_FLOAT3, UNIFORM_FLOAT4,   UNIFORM_MATRIX2, UNIFORM_MATRIX3, UNIFORM_MATRIX4 }
enum	SolvingMethod { Euler, BackwardEuler }

Functions
void	__assert_fail (const QString &assertion, const char *file, unsigned int line, const char *function)
template<typename T >
bool	readAttr (T &data, const QByteArray &ba, size_t &pos)
	Read the attribute value from a QByteArray. More...
template<size_t n, size_t m, typename T >
bool	readAttr (Matrix< n, m, T > &data, const QByteArray &ba, size_t &pos)
template<size_t n, typename T >
bool	readAttr (Vector< n, T > &data, const QByteArray &ba, size_t &pos)
template<size_t n>
bool	readAttr (Vector< n, Colorb > &data, const QByteArray &ba, size_t &pos)
template<typename T , typename U >
bool	readAttr (std::pair< T, U > &data, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (SymmetricTensor &data, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (vertex &v, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (VtxVtxPair &pr, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (Triangle &t, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (CellCellPair &pr, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (QString &data, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (QStringList &data, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (QByteArray &qba, const QByteArray &ba, size_t &pos)
template<>
bool	readAttr (Colorb &color, const QByteArray &ba, size_t &pos)
template<typename T >
bool	readAttr (std::vector< T > &data, const QByteArray &ba, size_t &pos)
template<typename KeyT , typename ValueT >
bool	readAttr (std::map< KeyT, ValueT > &data, const QByteArray &ba, size_t &pos)
template<typename T >
bool	writeAttr (const T &data, QByteArray &ba)
	Write the attribute value from a QByteArray. More...
template<size_t n, size_t m, typename T >
bool	writeAttr (const Matrix< n, m, T > &data, QByteArray &ba)
template<size_t n, typename T >
bool	writeAttr (const Vector< n, T > &data, QByteArray &ba)
template<size_t n>
bool	writeAttr (const Vector< n, Colorb > &data, QByteArray &ba)
template<typename T , typename U >
bool	writeAttr (const std::pair< T, U > &data, QByteArray &ba)
template<>
bool	writeAttr (const SymmetricTensor &data, QByteArray &ba)
template<>
bool	writeAttr (const vertex &v, QByteArray &ba)
template<>
bool	writeAttr (const VtxVtxPair &e, QByteArray &ba)
template<>
bool	writeAttr (const Triangle &t, QByteArray &ba)
template<>
bool	writeAttr (const CellCellPair &w, QByteArray &ba)
template<>
bool	writeAttr (const QString &s, QByteArray &ba)
template<>
bool	writeAttr (const QStringList &s, QByteArray &ba)
template<>
bool	writeAttr (const QByteArray &qba, QByteArray &ba)
template<>
bool	writeAttr (const Colorb &color, QByteArray &ba)
template<typename T >
bool	writeAttr (const std::vector< T > &data, QByteArray &ba)
template<typename KeyT , typename ValueT >
bool	writeAttr (const std::map< KeyT, ValueT > &data, QByteArray &ba)
template<typename KeyT , typename ValueT >
ValueT &	operator->* (const KeyT &key, AttrMap< KeyT, ValueT > &map)
template<typename KeyT , typename ValueT >
ValueT &	operator->* (const KeyT &key, AttrMap< KeyT, ValueT > *map)
template<typename ValueT >
ValueT &	operator->* (const wall &e, AttrMap< CellCellPair, ValueT > *map)
template<typename ValueT >
ValueT &	operator->* (const wall &e, AttrMap< CellCellPair, ValueT > &map)
template<typename ValueT >
ValueT &	operator->* (const edge &e, AttrMap< VtxVtxPair, ValueT > &map)
template<typename ValueT >
ValueT &	operator->* (const edge &e, AttrMap< VtxVtxPair, ValueT > *map)
bool	readAttr (BezierSurface::VertexData &m, const QByteArray &ba, size_t &pos)
bool	writeAttr (const BezierSurface::VertexData &m, QByteArray &ba)
template<class T >
T	clamp (const T &val, const T &min, const T &max)
	A function to clamp a value to a range. More...
mgx_EXPORT QColor	convertToQColor (const Color< float > &c)
mgx_EXPORT QColor	convertToQColor (const Color< double > &c)
mgx_EXPORT QColor	convertToQColor (const Color< long double > &c)
mgx_EXPORT QColor	convertToQColor (const Color< unsigned char > &c)
mgx_EXPORT QColor	convertToQColor (const Color< unsigned short > &c)
mgx_EXPORT void	convertFromQColor (Color< float > &c, const QColor &col)
mgx_EXPORT void	convertFromQColor (Color< double > &c, const QColor &col)
mgx_EXPORT void	convertFromQColor (Color< long double > &c, const QColor &col)
mgx_EXPORT void	convertFromQColor (Color< unsigned char > &c, const QColor &col)
mgx_EXPORT void	convertFromQColor (Color< unsigned short > &c, const QColor &col)
template<class T >
Color< T >	convertHSVtoRGB (T h, T s, T v)
	Return a color based on HSV values. More...
template<class T >
Color< T >	convertHSVtoRGB (const Color< T > &hsv)
	Return a color based on HSV values. More...
template<class T >
Color< T >	convertRGBtoHSV (const Color< T > &rgb)
	Return a color based on HSV values. More...
Colorf	composite (const Colorf &dest, const Colorf &source, comp::CompositeMode mode=comp::OVER)
	Compose a source with dest. More...
Colorb	composite (const Colorb &dest, const Colorb &source, comp::CompositeMode mode=comp::OVER)
	Compose a source with dest. More...
QStringList	compModes ()
	Get the list of composition modes. More...
comp::CompositeMode	stringToCompMode (const QString &s)
	Map Gui input string to Composition mode. More...
Colorb	stringToColorb (const QString &s)
	Map Gui input string to Colorb. More...
std::ostream &	operator<< (std::ostream &s, const Colorbar::Position &pos)
std::istream &	operator>> (std::istream &s, Colorbar::Position &pos)
QTextStream &	operator<< (QTextStream &s, const Colorbar::Position &pos)
QTextStream &	operator>> (QTextStream &s, Colorbar::Position &pos)
QDataStream &	operator<< (QDataStream &s, const Colorbar::Position &pos)
QDataStream &	operator>> (QDataStream &s, Colorbar::Position &pos)
bool	progressAdvance ()
bool	progressAdvance (int step)
void	progressStart (const std::string &msg, int steps)
void	progressSetMsg (const std::string &msg)
bool	progressCancelled ()
void	progressStop ()
cuda_EXPORT int	checkCudaError (const std::string &msg)
cuda_EXPORT uint	getThreadCount (uint threadPos, uint totThreads)
cuda_EXPORT int	errMsg (const std::string &s)
cuda_EXPORT size_t	userMem ()
template<typename T >
T *	devP (thrust::device_vector< T > &DVec)
template<typename T >
T *	devP (thrust::device_vector< T > *DVec)
double	atomicAddMGX (double *address, double val)
void	freeMem ()
void	holdMem ()
size_t	memLeft (size_t memrq, size_t roomrq, size_t mem)
cuda_EXPORT int	initGPU ()
cuda_EXPORT int	setHoldMemGPU (uint holdmem)
cuda_EXPORT void	memAvail ()
cuda_EXPORT int	averageGPU (const Point3i &imgSize, const Point3i &radius, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	medianGPU (const Point3i &imgSize, const Point3i &radius, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	medianOfMediansGPU (const Point3i &imgSize, const Point3i &radius, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	dilateGPU (const Point3i &imgSize, const Point3i &radius, bool roundNhbd, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	erodeGPU (const Point3i &imgSize, const Point3i &radius, bool byLabel, bool roundNhbd, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	gaussianBlurGPU (const Point3i &imgSize, const Point3f &imgStep, const Point3f &sigma, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	sharpenGPU (const Point3i &imgSize, const Point3f &imgStep, const Point3f &sigma, const float amount, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	applyKernelGPU (const Point3i &imgSize, const HVecF &kernelX, const HVecF &kernelY, const HVecF &kernelZ, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	colorGradGPU (const Point3i &imgSize, float div, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	edgeDetectGPU (const Point3i &imgSize, ushort lowthresh, ushort highthresh, float mult, ushort fillval, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	insideMeshGPU (const Point3i &base, const Point3i &size, const Point3f &step, const Point3f &shift, const HVec3F &pts, const HVec3U &tris, const HVec3F &nrmls, HVecUS &dstdata)
cuda_EXPORT int	nearMeshGPU (const Point3i &base, const Point3i &size, const Point3f &step, const Point3f &shift, const HVec3F &pts, const HVec3F &nrmls, float minDist, float maxDist, HVecUS &dstdata)
cuda_EXPORT int	clipStackGPU (const Point3i &imgSize, const Point3f &step, const Point3f &shift, const Point3u &clipDo, HVec4F &pn, const HVecUS &srcdata, HVecUS &dstdata)
cuda_EXPORT int	voxelEditGPU (const Point3i &base, const Point3i &size, const Point3i &imgSize, const Point3f &step, const Point3f &shift, const Point3f &p, const Point3f &pz, float radius, ushort color, const Point3u &clipDo, const HVec4F &pn, HVecUS &data)
template<typename T >
int	multGPU (T *v, typename T::value_type::value_type a, T *r)
template<typename T >
int	multGPU (T *v1, T *v2, typename T::value_type::value_type &r)
template<typename TM , typename TV >
int	multGPU (DeviceVu *nb, TM *mv, TM *me, TV *v, TV *r)
template<typename T >
int	addToDiagGPU (typename T::value_type::value_type a, T *r)
template<typename T >
int	addGPU (T *v1, T *v2, T *r)
template<typename T >
int	subtractGPU (T *v1, T *v2, T *r)
template<typename T >
int	saxpyGPU (T *v1, T *v2, typename T::value_type::value_type a, T *r)
template<typename T >
int	fillGPU (typename T::value_type::value_type a, T *r)
template<typename T >
int	minGPU (T *v, typename T::value_type::value_type &r)
template<typename T >
int	maxGPU (T *v, typename T::value_type::value_type &r)
template<typename T >
int	jacobiPreCondGPU (DeviceVu *nb, T *mv, T *me, T *av, T *ae)
template<typename T1 , typename T2 >
int mgx_EXPORT	copyGPU (T1 *src, T2 *dst)
template<typename T >
int mgx_EXPORT	allocGPU (T **vec, size_t n)
bool	getGaussianMask1D (const float step, const float sigma, HostVf &mask, int &radius)
bool	getRoundMask3D (const Point3i &radius, HostVf &mask)
void	normalizeMaskScale (HostVf &mask)
__device__ __host__ void	getXY (uint idx, const Point3i &size, int &x, int &y)
__device__ __host__ void	getXZ (uint idx, const Point3i &size, int &x, int &z)
__device__ __host__ void	getYZ (uint idx, const Point3i &size, int &y, int &z)
__device__ __host__ void	getXYZ (uint idx, const Point3i &size, int &x, int &y, int &z)
__device__ __host__ Point3i	getStride (const Point3i &size)
__device__ __host__ bool	clipPoint (const Point3f &wp, const Point3u &clipDo, const Point4f *pn)
template<typename T >
void	flipImage (DimEnum dim, Point3i imgSize, Point3i &flipImgSize, const T &src, T &dst)
uint	getTotalThreads (DimEnum dim, const Point3i size)
int	checkBounds (const Point3i &imgSize, const Point3i &base, const Point3i &size)
uint	getStep (uint pos, uint maxpos, size_t stride, size_t szof, size_t mem)
template<typename opT , typename T >
int	processSepOP (opT opx, opT opy, opT opz, const Point3i &imgSize, const Point3i &radius, const thrust::host_vector< T > &srcData, thrust::host_vector< T > &dstData)
template<typename opT , typename T >
int	processNonSepOP (opT op, const Point3i &imgSize, const Point3i &radius, const thrust::host_vector< T > &srcData, thrust::host_vector< T > &dstData)
mgx_EXPORT QString	stripCurrentDir (QString file)
	Returns the path relative to the current directory. More...
mgx_EXPORT QString	stripDir (const QString &dir, QString file)
	Remove a directory from the file path. More...
mgx_EXPORT QString	getDir (QString file)
	Get the directory containing a file (base of the name only) More...
mgx_EXPORT bool	setCurrentPath (const QString &path)
	Set the current path. More...
mgx_EXPORT QString	currentPath ()
	Get the current path. More...
mgx_EXPORT QDir	currentDir ()
	Get the current path as a directory. More...
mgx_EXPORT QString	absoluteFilePath (QString filename)
	Return the absolute path to a file. More...
mgx_EXPORT QString	resolvePath (QString path)
	Return the absolute file path, resolving things like environement variables and '~' for $HOME. More...
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
const VVAddOp< DistNhbdT, MatrixT, VectorT, ScalarT >	operator+ (DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &p_vec1, DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &p_vec2)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
const VVSubOp< DistNhbdT, MatrixT, VectorT, ScalarT >	operator- (DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &p_vec1, DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &p_vec2)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
const VSMultOp< DistNhbdT, MatrixT, VectorT, ScalarT >	operator* (DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &p_vec, ScalarT p_a)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
const VSaxpyOp< DistNhbdT, MatrixT, VectorT, ScalarT >	operator+ (const VSMultOp< DistNhbdT, MatrixT, VectorT, ScalarT > &p_VSMultOp, DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &p_vec)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
const MMAddOp< DistNhbdT, MatrixT, VectorT, ScalarT >	operator+ (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &p_mat1, DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &p_mat2)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
const MMSubOp< DistNhbdT, MatrixT, VectorT, ScalarT >	operator- (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &p_mat1, DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &p_mat2)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
const MSMultOp< DistNhbdT, MatrixT, VectorT, ScalarT >	operator* (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &p_mat, ScalarT p_a)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
const MVMultOp< DistNhbdT, MatrixT, VectorT, ScalarT >	operator* (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &p_mat, DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &p_vec)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
double	maxDiagonal (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &m)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
double	maxOffDiagonal (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &m)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
double	maxEntry (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &m)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
double	minDiagonal (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &m)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
double	minOffDiagonal (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &m)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
double	minEntry (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &m)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
ScalarT	norm (DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &v)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
ScalarT	norm (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &m)
template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >
void	jacobiPreCond (DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &m, DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &a)
template<typename T1 , typename T2 >
int	copyGPU (T1 *src, T2 *dst)
template<typename T >
int	allocGPU (T **vec, size_t n)
bool	readAttr (MeinhardtAI::CellData &m, const QByteArray &ba, size_t &pos)
bool	writeAttr (const MeinhardtAI::CellData &m, QByteArray &ba)
template<typename T >
void	copy_symmetric (T &e2, const T &e1)
	Default copy of the arc uses the = operator. More...
CU_HOST_DEVICE bool	isNan (float s)
CU_HOST_DEVICE bool	isNan (double s)
template<typename T >
CU_HOST_DEVICE Point3u	toVoxelsCeil (const Point3(T) &p, const Point3(T) &step)
template<typename T >
CU_HOST_DEVICE Vector< 3, T >	multMatrix4Point3 (const Matrix< 4, 4, T > &m, const Vector< 3, T > &p)
	Multiply openGL 4D matrix by 3D point and return 3D point. More...
template<typename T >
T CU_HOST_DEVICE	interpolate (const T &a, const T &b, const T &s)
	Interpolate between values. More...
template<typename T >
T CU_HOST_DEVICE	interpolate (const Point3(T) &t1, const Point3(T) &t2, const Point3(T) &t3, T c1, T c2, T c3, const Point3(T) &p)
	Interpolate values on a triangle. More...
template<typename T >
CU_HOST_DEVICE bool	planeLineIntersect (const Point3(T) &p, const Point3(T) &nrml, const Point3(T) &u1, const Point3(T) &u2, T &s, Point3(T) &u)
	Plane-Line Intersection. More...
template<typename T >
CU_HOST_DEVICE	Point3 (T) triangleGradient(const Point3(T) &p1
	if (area2==0) return Point3(T)()
	return (nrml ^(c3 *(p2 - p1)+c1 *(p3 - p2)+c2 *(p1 - p3)))/area2
template<typename T >
CU_HOST_DEVICE bool	lineLineIntersect (Point3(T) p1, Point3(T) p2, Point3(T) q1, Point3(T) q2, T &s, T &u, Point3(T) &intersect)
	Line-Line Intersection returns whether two line segments intersect or not saves the location on where on the segments (s, u) and the intersection point (intersect) originally from CellMaker, only used in Join2DMeshes so far, not tested for true 3d lines. More...
template<typename T >
CU_HOST_DEVICE T	triangleArea (const Point3(T) &a, const Point3(T) &b, const Point3(T) &c)
template<typename T >
CU_HOST_DEVICE T	signedTetraVolume (const Point3(T) &a, const Point3(T) &b, const Point3(T) &c)
template<typename T >
CU_HOST_DEVICE void	getBasisFromPlane (const Point3(T) &nrml, Point3(T)&x, Point3(T) &y, Point3(T) &z)
template<typename T >
CU_HOST_DEVICE int	rayTriangleIntersect (const Point3(T) &r0, const Point3(T) &r1, const Point3(T) &t0, const Point3(T) &t1, const Point3(T) &t2, Point3(T) &intp)
template<typename T >
CU_HOST_DEVICE T	distLinePoint (const Point3(T) &v1, const Point3(T) &_v2, const Point3(T) &_p, bool segment)
CU_HOST_DEVICE Point3f	imageToWorld (const Point3i &img, const Point3f &step, const Point3f &shift)
CU_HOST_DEVICE Point3i	worldToImage (const Point3f &wrld, const Point3f &step, const Point3f &shift)
CU_HOST_DEVICE size_t	offset (uint x, uint y, uint z, uint xsz, uint ysz)
CU_HOST_DEVICE size_t	getOffset (const int x, const int y, const int z, const Point3i &size)
CU_HOST_DEVICE size_t	getOffset (const uint x, const uint y, const uint z, const Point3u &size)
CU_HOST_DEVICE size_t	getOffset (const Point3i p, const Point3i &size)
Point3d	projectPointOnPlane (const Point3d &P, const Point3d &Q, const Point3d &N)
bool	reportGLError (const QString &str, const char *file, int line)
mgx_EXPORT void	matrixInverseGSL (std::vector< std::vector< double > > &inputM, std::vector< std::vector< double > > &outputM)
mgx_EXPORT void	systemSolveGSL (std::vector< std::vector< double > > &inputM, std::vector< double > &x)
mgx_EXPORT void	calcBetweenness (cellGraph &C, std::map< cell, double > &cellBetweenessMap)
mgx_EXPORT bool	calcBetweenness (cellGraph &C, std::map< IntInt, double > &weights, std::map< cell, double > &cellBetweenessMap)
mgx_EXPORT bool	calcBetweenness (std::map< IntInt, double > &neighborhoodGraph, std::map< int, double > &cellBetweenessMap)
mgx_EXPORT std::map< IntInt, double >	generateWeights (std::map< IntInt, double > neighborMap, bool constWeight)
mgx_EXPORT std::vector< cell >	cuthillMckeeOrdering (cellGraph &C, std::map< cell, int > &cellOrder)
mgx_EXPORT std::vector< cell >	cuthillMckeeOrdering (cellGraph &C, std::map< cell, int > &cellOrder, const cell &minCell)
mgx_EXPORT void	reverseVector (std::vector< cell > &input)
mgx_EXPORT bool	subdivideBisect (vvGraph &S, const vertex &v1, const vertex &v2, const vertex &v3, VtxVec *vs=0, Subdivide *sDiv=0)
	Subdivide triangle with a propagating bisection that gives good triangles. More...
template<typename GraphT >
bool	spliceNhbs (GraphT &S, typename GraphT::vertex_t a, typename GraphT::vertex_t b)
	Splice the neighborhood of b into a (so we can delete b) More...
mgx_EXPORT int	getLabel (const vertex &v1, const vertex &v2, const vertex &v3)
	Return the label for a triangle. More...
mgx_EXPORT bool	getLabelCount (const vvGraph &S, VtxIntMap &labCount)
	Count labels for each vertex in the graph. More...
mgx_EXPORT bool	splitEdge (vvGraph &S, vertex v1, vertex v2, Subdivide *sDiv=0)
	Split an edge in the S graph. More...
mgx_EXPORT int	mergeVertices (vvGraph &S, const VtxVec &vs)
	Merge vertices, returns number of vertices deleted. More...
mgx_EXPORT bool	checkBorderTris (const vvGraph &S, bool select=true)
	Check for unlabeled vertices, border triangles and islands of label in preparation to make a cell mesh. More...
mgx_EXPORT bool	deleteCells (vvGraph &S, const VtxVec &V)
	Check for unlabeled vertices, border triangles and islands of label in preparation to make a cell mesh. More...
mgx_EXPORT int	fixBorderTris (vvGraph &S)
	Check for border triangles with all labels -1 and merge their vertices together. More...
mgx_EXPORT bool	mgxmToMgxc (const vvGraph &srcS, vvGraph &S, double wallMax=0)
	Convert a normal (MGXM) mesh to a cell (MGXC) mesh. More...
mgx_EXPORT void	markMargins (vvGraph &M, vvGraph &S, bool remborders=true)
	Mark the cells and tissue margin vertices. More...
mgx_EXPORT void	markMargins (vvGraph &S, bool remborders=true)
	Mark the cells and tissue margin vertices. More...
mgx_EXPORT void	markMargin (vvGraph &S, vertex v, bool remborders=true)
	Mark the cells and tissue margin vertices. More...
mgx_EXPORT int	setNormals (const vvGraph &S)
	Set the normals in a graph. More...
mgx_EXPORT void	correctNormals (vvGraph &S)
	Correct MGXC normals (happens for non-star shaped cells) More...
mgx_EXPORT bool	setNormal (const vvGraph &S, const vertex &v)
	Set the normal in a single vertex. More...
mgx_EXPORT bool	calcNormal (const vvGraph &S, const vertex &v, Point3d &nrml)
	Set the normal in a single vertex. More...
mgx_EXPORT bool	neighborhoodGraph (const vvGraph &S, double tolerance, NhbdGraphInfo &info, bool throwError=true)
mgx_EXPORT std::vector< int >	findAllLabels (const vvGraph &S)
	return ALL labels of a vvGraph originally in CellAtlas, now also used in other AddOns More...
mgx_EXPORT std::set< int >	findAllLabelsSet (const vvGraph &S)
mgx_EXPORT std::set< int >	findAllSelectedLabels (const vvGraph &S)
	return ALL labels of selected vertices of a vvGraph originally in CellAtlas, now also used in other AddOns More...
mgx_EXPORT void	neighborhood2D (vvGraph &S, std::map< IntInt, double > &neighMap, QString weightType="", bool ignoreOutside=true)
	creates a wall map with the neighboring cells as key (pair) and the wall length as value More...
mgx_EXPORT vertex	nearestVertexOnMesh (const Point3d &targetPoint, const vvGraph &S)
mgx_EXPORT Point3d	nearestPointOnMesh (const Point3d &targetPoint, const vvGraph &S)
mgx_EXPORT std::map< int, double >	dijkstra (vvGraph &S, std::map< IntInt, double > &wallAreas, std::set< int > &selectedCells, bool equalWeights, double cutOffDistance, double wallThreshold)
mgx_EXPORT std::map< int, double >	dijkstra (std::set< int > &allCellLabels, std::map< IntInt, double > &wallAreas, std::set< int > &selectedCells, bool equalWeights, double cutOffDistance, double wallThreshold)
mgx_EXPORT std::map< int, double >	dijkstra (std::set< int > &allCellLabels, std::map< IntInt, double > &wallAreas, std::map< int, double > &initialCells, bool equalWeights, double cutOffDistance, double wallThreshold)
mgx_EXPORT std::set< int >	aStar (std::vector< int > &uniqueLabels, std::map< int, Point3d > &cellCentroids, std::map< IntInt, double > &wallAreas, int label1, int label2, double wallThreshold, bool equalWeights)
mgx_EXPORT bool	findIntersectPoint (Point3d coordCellCentroid, Point3d &dirVec, std::vector< Triangle > &cellTriangles, int &stopCounter, Point3d &intersectP)
	shoots rays from the cell centroid along a direction and checks if it hits any of the cell triangles too avoid shooting through the edge between triangles the centroid point is varied slightly if nothing is hit More...
mgx_EXPORT double	estimateCellLength (int currentLabel, Point3d coordCellCentroid, Point3d &dirVec, triVector &cellTriangles)
	estimates the size of the cell in a given direction by shooting two rays in a specified direction and its opposite More...
mgx_EXPORT void	generateLabelTriangleMap (const vvGraph &S, std::map< int, triVector > &cellTriangles)
	goes through all triangles of the vvGraph and builds up a map from label to triangle vector More...
mgx_EXPORT std::map< int, std::vector< vertex > >	generateLabelVertexMap (const vvGraph &S)
	goes through all vertices of the vvGraph and builds up a map from label to vertex vector More...
mgx_EXPORT void	findBorderVerticesOfCell (vvGraph &S, int cellLabel, std::set< vertex > &verticesCell, std::vector< vertex > &borderVerticesOrdered)
mgx_EXPORT void	findBorderVerticesOfCellsCombined (vvGraph &S, std::set< int > cellLabels, std::set< vertex > &verticesCells, std::vector< vertex > &borderVerticesOrdered)
mgx_EXPORT Point3i	triIndex (Point3i t)
mgx_EXPORT int	vIndex (const Point3d &pos, Point3dIntMap &vMap, float tolerance)
mgx_EXPORT int	getKeyOfMaxValue (const std::map< int, double > &mapToTest)
mgx_EXPORT std::map< int, int >	shiftMap (std::map< int, double > &mapToShift, int shift)
bool	readAttr (HejnowiczSurface::VertexData &m, const QByteArray &ba, size_t &pos)
	Serialize read for Vertex data. More...
bool	writeAttr (const HejnowiczSurface::VertexData &m, QByteArray &ba)
	Serialize write for Vertex data. More...
mgx_EXPORT QStringList	supportedImageReadFormats ()
mgx_EXPORT QStringList	supportedImageWriteFormats ()
mgx_EXPORT bool	saveImage (QString filename, const Image3D &data, QString type="CImg Auto", unsigned int nb_digits=0)
mgx_EXPORT bool	saveTIFFImage (QString filename, const Image3D &data)
mgx_EXPORT bool	loadTIFFImage (QString filename, Image3D &data, bool allocate_data=false)
mgx_EXPORT bool	loadImage (QString filename, Image3D &data, bool allocate_data=false)
mgx_EXPORT HVecUS	resize (const HVecUS &data, const Point3i &before, const Point3i &after, bool center)
template<typename VertexContent , typename EdgeContent >
const VVGraph< VertexContent, EdgeContent >::vertex_t &	insert (const typename VVGraph< VertexContent, EdgeContent >::vertex_t &a, const typename VVGraph< VertexContent, EdgeContent >::vertex_t &b, VVGraph< VertexContent, EdgeContent > &S)
template<class Graph >
Graph::edge_t	insertAfter (const typename Graph::vertex_t &v, const typename Graph::vertex_t &ref, const typename Graph::vertex_t &nv, Graph &S)
	Splice nv after ref in v if ref is not null. More...
template<class Graph >
Graph::edge_t	insertBefore (const typename Graph::vertex_t &v, const typename Graph::vertex_t &ref, const typename Graph::vertex_t &nv, Graph &S)
	Splice nv before ref in v if ref is not null. More...
template<typename DMatrixT , typename DVectorT >
int	BiCGStab (DMatrixT &A, DVectorT &x, DVectorT &b, double tolerance, uint maxiter=500, double maxnorm=1e100, int info=0)
template<typename DMatrixT , typename DVectorT >
int	BiCG (DMatrixT &A, DMatrixT &AT, DVectorT &x, DVectorT &b, double tolerance, uint maxiter=500, double maxnorm=1e100, int info=0)
template<typename DMatrixT , typename DVectorT >
int	CG (DMatrixT &A, DVectorT &x, DVectorT &b, double tolerance, uint maxiter=500, double maxnorm=1e100, int info=0)
template<typename DMatrixT , typename DVectorT >
int	CGPreCond (DMatrixT &A, DVectorT &x, DVectorT &b, double tolerance, uint maxiter=500, double maxnorm=1e100, int info=0)
template<typename DMatrixT , typename DVectorT >
int	BiCGStabPreCond (DMatrixT &A, DVectorT &x, DVectorT &b, double tolerance, uint maxiter=500, double maxnorm=1e100, int info=0)
mgx_EXPORT QString	qdemangle (std::string s)
	Demangle all the words in the string. More...
mgx_EXPORT std::string	demangle (std::string s)
	Demangle all the words in the string. More...
template<size_t nRows, typename T >
CU_HOST_DEVICE T	matrix_minor (const Matrix< nRows, nRows, T > &mat, size_t i, size_t j)
template<size_t nRows, size_t nCols, typename T >
CU_HOST_DEVICE Vector< nCols, T >	operator* (const Vector< nCols, T > &vec, const Matrix< nRows, nCols, T > &mat)
template<size_t nRows, size_t intSize, size_t nCols, typename T >
CU_HOST_DEVICE Matrix< nRows, nCols, T >	operator* (const Matrix< nRows, intSize, T > &mat1, const Matrix< intSize, nCols, T > &mat2)
template<typename T >
CU_HOST_DEVICE T	det (const Matrix< 1, 1, T > &mat)
template<typename T >
CU_HOST_DEVICE T	det (const Matrix< 2, 2, T > &mat)
template<typename T >
CU_HOST_DEVICE T	det (const Matrix< 3, 3, T > &mat)
template<size_t nRows, typename T >
CU_HOST_DEVICE T	det (const Matrix< nRows, nRows, T > &mat)
template<size_t nRows, typename T >
CU_HOST_DEVICE T	cofactor (const Matrix< nRows, nRows, T > &mat, size_t i, size_t j)
template<typename T >
CU_HOST_DEVICE Matrix< 1, 1, T >	inverse (const Matrix< 1, 1, T > &mat)
template<typename T >
CU_HOST_DEVICE Matrix< 2, 2, T >	inverse (const Matrix< 2, 2, T > &mat)
template<typename T >
CU_HOST_DEVICE Matrix< 3, 3, T >	inverse (const Matrix< 3, 3, T > &mat)
template<typename T >
Matrix< 4, 4, T >	inverse (const Matrix< 4, 4, T > &m)
template<size_t nRows, typename T >
CU_HOST_DEVICE Matrix< nRows, nRows, T >	inverse (const Matrix< nRows, nRows, T > &mat)
template<size_t nRows, size_t nCols, typename T >
CU_HOST_DEVICE Matrix< nCols, nRows, T >	transpose (const Matrix< nRows, nCols, T > &mat)
template<size_t nRows, size_t nCols, typename T >
CU_HOST_DEVICE T	normsq (const Matrix< nRows, nCols, T > &mat)
template<size_t nRows, size_t nCols, typename T >
CU_HOST_DEVICE T	norm (const Matrix< nRows, nCols, T > &mat)
void	createPlyDataFromAttr (Mesh *m, QStringList attrMapsToBeSaved, std::vector< PlyCellData > &cellVec, std::vector< PlyWallData > &wallVec)
void	fillTreeWidgetWithAttrMaps (Mesh *m, QTreeWidget *tree, QStringList *selected=0)
mgxBase_EXPORT void	getBBox (const HVec3F &pts, Point3f *bBox)
double	geoMeanVectorValue (std::vector< double > &values)
mgxBase_EXPORT SymmetricTensor	customDirectionTensor (SymmetricTensor origTensor, Point3f customX, Point3f customY, bool shearB)
mgxBase_EXPORT double	lengthCustomDirTensor3D (SymmetricTensor origTensor, Point3f customDir)
mgxBase_EXPORT void	findCellJunctionsInOrder (Mesh *mesh, vvGraph &S, JunctionInformation &jInfo)
mgxBase_EXPORT void	findCellJunctions (Mesh *mesh, vvGraph &S, JunctionInformation &jInfo)
mgxBase_EXPORT void	findCellJunctionsParents (Mesh *mesh, vvGraph &S, JunctionInformation &jInfo)
Point2f	calcSignalBounds (const vvGraph &S)
mgx_EXPORT QDir	resourceDir ()
	Returns resource directory. More...
mgx_EXPORT QList< QDir >	userProcessDirs ()
	Returns user processes directory. More...
mgx_EXPORT QList< QDir >	processDirs ()
	Returns processes directory. More...
mgx_EXPORT QDir	libDir ()
	Returns the libraries directory. More...
mgx_EXPORT QDir	includeDir ()
	Returns the includes directory. More...
mgx_EXPORT QDir	docDir ()
	Returns the documentation directory. More...
Point3GLub	vMapColor (uint u)
	Map unique colors to indices. More...
uint	vMapColor (Point3GLub &p)
	Map unique colors to indices. More...
QString	shield (QString s)
	Create representation of a string that can be written in a single line, without spaces. More...
QString	unshield (QString s)
	Retrieve a string that has been shielded with shield. More...
QString	shield_python (QString s)
	Shield a string to send it to the python interpreter. More...
QString	unshield_python (QString s)
	Retrieve a string that is retrieved from the python representation. More...
Point3d	stringToPoint3d (const QString &s)
	Convert a string to Point3d. More...
Point2f	stringToPoint2f (const QString &s)
Point2i	stringToPoint2i (const QString &s)
Point2u	stringToPoint2u (const QString &s)
Point2d	stringToPoint2d (const QString &s)
Point3u	stringToPoint3u (const QString &s)
bool	isGuiThread ()
bool	readAttr (PolarSurface::VertexData &m, const QByteArray &ba, size_t &pos)
bool	writeAttr (const PolarSurface::VertexData &m, QByteArray &ba)
mgx_EXPORT ProcessDefinition *	getProcessDefinition (const QString &processName)
	Retrieves the process definition from the name of the process. More...
mgx_EXPORT bool	getLastParms (const Process &proc, QStringList &parms)
	Get the parameters for a given process. More...
mgx_EXPORT bool	getDefaultParms (const Process &proc, QStringList &parms)
	Get the default parameters for a given process (i.e. the ones defined by the process) More...
mgx_EXPORT bool	saveDefaultParms (const Process &proc, const QStringList &parms)
	Save the default parameters in memory. More...
mgx_EXPORT bool	checkProcessParms (const Process &proc, const QStringList &parms, size_t *nbParms=0)
	Check if the parameters have enough defaults. More...
mgx_EXPORT bool	getLastParms (const QString &processName, QStringList &parms)
	Get the parameters for a given process. More...
mgx_EXPORT bool	getDefaultParms (const QString &processName, QStringList &parms)
	Get the default parameters for a given process (i.e. the ones defined by the process) More...
mgx_EXPORT bool	saveDefaultParms (const QString &processName, const QStringList &parms)
	Save the default parameters in memory. More...
mgx_EXPORT bool	checkProcessParms (const QString &processName, const QStringList &parms, size_t *nbParms=0)
	Check if the parameters have enough defaults. More...
mgx_EXPORT ProcessDefinition *	getProcessDefinition (const QString &processThread, const QString &processName)
	Get the definition of a process. More...
mgx_EXPORT QStringList	listProcesses ()
	Returns the list of names of the processes. More...
mgx_EXPORT bool	getProcessText (const QString &text, QString &tab, QString &folder, QString &name)
	Split process name into Tab/Folder/Name. More...
mgx_EXPORT bool	validProcessName (const QString &processName)
	Check if the processName exist in the list of processes. More...
mgx_EXPORT bool	stringToBool (const QString &string)
	Helper function converting a string into a boolean. More...
mgx_EXPORT bool	stringToWorkStore (const QString &string)
	Returns true if string correspond to the work store, false otherwise. More...
mgx_EXPORT bool	stringToMainStore (const QString &string)
	Returns true if string correspond to the main store, false otherwise. More...
QString	boolToString (bool b)
	Helper function converting a boolean into a string. More...
QTreeWidgetItem *	getFolder (QString name, QHash< QString, QTreeWidgetItem * > &folders, QTreeWidget *tree)
	Find or create a folder from a process tree. More...
void	filterProcesses (QTreeWidget *tree, const QString &filter_text)
	Show only processes whose name match the regular expression. More...
template<size_t dim, typename T >
bool	fromQString (Vector< dim, T > &p, const QString &s, QString sep=" ")
	Convert a QString to a Point. More...
mgx_EXPORT void	progressStart (const QString &msg, int steps=0, bool allowCancel=true)
mgx_EXPORT void	progressStart (const char *msg, int steps=0, bool allowCancel=true)
mgx_EXPORT void	progressStart (const std::string &msg, int steps=0, bool allowCancel=true)
mgx_EXPORT bool	progressCanceled ()
mgx_EXPORT void	progressCancel ()
mgx_EXPORT void	progressSetMsg (const QString &msg)
mgx_EXPORT void	progressSetMsg (const char *msg)
mgx_EXPORT void	progressSetMax (int steps=0)
Quaternion	operator* (double s, const Quaternion &q)
Quaternion	operator* (const Quaternion &q, double s)
mgx_EXPORT unsigned int	sran_time ()
	Initialize the random number with the current time of the day (in microsecond) More...
mgx_EXPORT void	sran (unsigned int seed)
	Initialize the random number generator. More...
mgx_EXPORT double	ran (double M)
	Generate a random number uniformly distributed between 0 and M. More...
mgx_EXPORT long double	ran (long double M)
	Generate a random number uniformly distributed between 0 and M. More...
mgx_EXPORT float	ran (float M)
	Generate a random number uniformly distributed between 0 and M. More...
template<typename T >
double	ran (T M)
	Generate a random number uniformly distributed between 0 and M. More...
template<size_t dim, typename T >
Vector< dim, T >	ran (const Vector< dim, T > &V)
	Generate a random vector uniformely distributed between Vector(0) and V. More...
mgx_EXPORT double	gaussRan (double mean, double sigma)
	Generate a random number with gaussian distribution. More...
template<size_t dim>
Vector< dim, double >	gaussRan (const Vector< dim, double > &mean, const Vector< dim, double > &sigma)
	Generate a random vector with gaussian distribution. More...
mgx_EXPORT long int	ranInt ()
	Returns a random number between 0 and RAND_MAX. More...
mgx_EXPORT long int	ranInt (long int n)
	Returns a random number between 0 and n (excluded), for n <= RAND_MAX. More...
template<size_t dim, typename T >
Vector< dim, T >	ranInt (const Vector< dim, T > &n)
	Returns a vector of random numbers. More...
template<typename Key , typename Compare , typename Allocator >
void	swap (multiset_vector< Key, Compare, Allocator > &v1, multiset_vector< Key, Compare, Allocator > &v2)
template<typename Key , typename Compare , typename Allocator >
void	swap (set_vector< Key, Compare, Allocator > &v1, set_vector< Key, Compare, Allocator > &v2)
QTextStream &	operator<< (QTextStream &s, const GLSLValue &ut)
QTextStream &	operator>> (QTextStream &s, GLSLValue &ut)
std::ostream &	operator<< (std::ostream &s, const GLSLValue &ut)
std::istream &	operator>> (std::istream &s, GLSLValue &ut)
bool	readAttr (Solver::VtxData &m, const QByteArray &ba, size_t &pos)
bool	writeAttr (const Solver::VtxData &m, QByteArray &ba)
bool	readAttr (Solver::EdgData &m, const QByteArray &ba, size_t &pos)
bool	writeAttr (const Solver::EdgData &m, QByteArray &ba)
std::set< int > mgxBase_EXPORT	findNeighborsLabel (Store *store, Point3i imgSize, Point3i p, int radius=1)
void mgx_EXPORT	swapMetaData (Store *s1, Store *s2)
void	calcEigenVecsValues (Matrix3d &M, Point3d &p1, Point3d &p2, Point3d &p3, Point3d &ev)
Matrix3d	OuterProduct (Point3d p1, Point3d p2)
void mgx_EXPORT	registerSystemProcesses ()
void mgx_EXPORT	unregisterSystemProcesses ()
mgx_EXPORT QList< int >	extractVersion (QIODevice &file)
bool	savePLYCellGraph (Mesh *mesh, const QString &filename, bool binary)
mgx_EXPORT void	triangulatePolygon (float maxArea, const std::vector< Point2f > &pList, const std::vector< Point2i > &segList, std::vector< Point2f > &ptList, std::vector< Point3i > &triList, std::vector< Point2i > &segtList, bool boundary=false, bool addPointsCenter=true)
mgx_EXPORT void	triangulateDelaunay2D (const std::vector< Point2f > &pList, std::vector< Point2f > &ptList, std::vector< Point3i > &triList)
template<typename T , typename U >
refpair< T, U >	tie (T &x, U &y)
	Tie two variables to the values of a pair. More...
Triangle	flipTri (const Triangle &t)
mgx_EXPORT bool	triangleOrientationCheck (std::vector< Point3i > &triList, int idxRefTri=-1)
	triangleOrientationCheck More...
mgx_EXPORT std::vector< Point3d >	orderPolygonSegs (std::vector< std::pair< Point3d, Point3d > > &polygonSegs, bool keepPolySegs=true)
	orderPolygonSegs More...
mgx_EXPORT std::vector< std::vector< Point3d > >	orderPolygonSegsMulti (std::vector< std::pair< Point3d, Point3d > > &polygonSegs)
mgx_EXPORT Point3d	getPolygonNrml (std::vector< Point3d > &pointsPolygon)
	getPolygonNrml More...
mgx_EXPORT Point3d	getPolygonNrml (std::vector< Point3d > &pointsPolygon, int &idxP3)
mgx_EXPORT bool	isDataPlanar (std::vector< Point3d > &inputVertices)
	isDataPlanar More...
mgx_EXPORT bool	findPolygonPlane (std::vector< Point3d > &pointsPolygon, Point3d &planePos, Point3d &planeNrml)
	findPolygonPlane More...
mgx_EXPORT void	inplaceMatrixMultiply (std::vector< Point3d > &P, const Matrix3d &M)
	inplaceMatrixMultiply P := P*M More...
mgx_EXPORT bool	projectPointsOnPlane (std::vector< Point3d > &points, Point3d planePos, Point3d planeNrml)
	projectPointsOnPlane More...
mgx_EXPORT Matrix3d	calcRotMatrix (Point3d nrmlStart, Point3d nrmlEnd, Point3d rot_axis=Point3d(0, 0, 0))
	calcRotMatrix More...
mgx_EXPORT void	rotatePointsIntoXY (Point3d polygonNormal, std::vector< Point3d > &pointsPolygon, Matrix3d &inv_rot_polygon_plane)
	rotatePointsIntoXY More...
mgx_EXPORT bool	triangulatePolygon3D (float maxArea, Point3d polygonNormal, std::vector< Point3d > &pointsPolygon, std::vector< Point3i > &triList, std::vector< Point3d > &ptList, bool boundary, bool inOrder, bool pointsCenter)
	triangulatePolygon3D More...
mgx_EXPORT Point3d	orthogonalVector (Point3d vec)
	orthogonalVector More...
mgx_EXPORT Point3d	calcNearestPointOnBezierGrid (const Point3d &targetPoint, std::vector< std::vector< Point3d > > &bezier, Point2i &bezIdx)
	calculates the nearest point of a tragetPoint on a bezier grid (bezier) More...
mgx_EXPORT Matrix3d	calcProjectedGrowthTensor (Matrix3d tensor, Point3d planeNrml)
	projectPointOnPlane More...
mgx_EXPORT bool	pointInPolygon (Point3d pointToTest, std::vector< Point3d > &polygon, bool debug=false)
mgx_EXPORT std::vector< Point2d >	lloydKMeans2D (std::vector< Point2d > &clusters, std::vector< Point2d > &data, int maxStep=-1)
	k means function for 2D data (lloyds algorithm) More...
mgx_EXPORT bool	lloydKMeans (std::vector< std::vector< double > > &inputClusters, std::vector< AttrMap< int, double > > &dataPoints, int maxStep=-1, double convergenceThreshold=0.01)
	k means function for n-D data (lloyds algorithm) NOTE: dimensions have to match, otherwise function returns false (size of each inputClusters vector == dataPoints.size()) More...
mgx_EXPORT double	interpolateArrayIndex (double value, double min, double max, double newRange)
mgx_EXPORT void	drawCross (QImage &image, int x, int y, int size, int crossSize, QRgb color)
mgx_EXPORT void	drawCircle (QImage &image, int x, int y, int size, QRgb color)
mgx_EXPORT double	gauss2D (double x, double y, double muX, double muY, double sigmaX, double sigmaY)
	returns the value of a 2D gaussian function More...
mgx_EXPORT Point3d	calcNearestPointOnBezierLine (const Point3d &targetPoint, std::vector< Point3d > &bezierVec, int &bezIdx, double &bezWeight)
	calculates the nearest point of a tragetPoint on a bezier line (bMap) as the bezier is discretized, it is approximated linearly between the nearest point and the closer neighbor point More...
mgx_EXPORT Point3d	calcNearestPointOnBezierLine (const Point3d &targetPoint, std::map< int, Point3d > &bMap, int &bezIdx, double &bezWeight)
mgx_EXPORT Point3d	calcNearestPointOnBezierLine (const Point3d &targetPoint, std::map< int, Point3d > &bMap)
mgx_EXPORT QRgb	calcRGB (double maxValue, double currentValue)
mgx_EXPORT QRgb	getColorFromLabel (int label)
mgx_EXPORT double	angleVectors (Point3d v1, Point3d v2, bool directed=false)
template<typename T >
CU_HOST_DEVICE T	min (const T a, const T b)
template<typename T >
T CU_HOST_DEVICE	max (const T a, const T b)
template<typename T >
CU_HOST_DEVICE T	trim (const T x, const T minx, const T maxx)
template<size_t dim, typename T , typename T1 >
CU_HOST_DEVICE Vector< dim, T >	map (const T &(*fct)(const T1 &), const Vector< dim, T1 > &v)
template<size_t dim, typename T , typename T1 >
CU_HOST_DEVICE Vector< dim, T >	map (T(*fct)(const T1 &), const Vector< dim, T1 > &v)
template<typename VertexContent , typename Alloc , typename charT >
std::basic_ostream< charT > &	operator<< (std::basic_ostream< charT > &ss, const Vertex< VertexContent > &v)
void	discretizeBezierLineRef (CuttingSurface *cutSurf, double vPos, double vRefPos, Matrix4d rotMat, int bezMapSize, std::map< int, Point3d > &bMap, std::map< int, Point3d > &diffbMap, std::map< int, Point3d > &refbMap)
bool	neighborhoodGraphLocal (const vvGraph &S, double tolerance, std::map< int, double > &cellWallArea, std::map< IntInt, double > &wallArea, std::map< int, double > &outsideWallArea)
	calculates the neighborhood graph, return data structure for total cell wall area and shared wall area between neighboring cells More...
int	findSelectedLabel (const vvGraph &S)
	find ONE selected vertex in a vvGraph and return its label return 0 if nothing is selected More...
bool	findTwoSelectedLabels (const vvGraph &S, int &label1, int &label2)
	find selected vertices in a vvGraph and return their TWO (different) labels return false if less than two different labels are selected More...
bool	pointInCone (Point3d axisVec, Point3d &coneTop, Point3d &coneBase, double coneAngle, Point3d &pointToTest)
	return true if a point is inside a cone More...
double	gauss1D (double x, double muX, double sigmaX)
	returns the value of a 1D gaussian function More...
double	calcCircumferential (Point3d dirRadRef, Point3d dirLongRef, Point3d cellCenter, Point3d cellOnLong)
Point3d	inPrimCoord (double radiant, Point3d dirRadRef, Point3d dirLongRef)
void	findMinMax (std::map< int, double > &map, double &min, double &max)
void	differentialOfBezierGrid (std::vector< std::vector< Point3d > > &bezierGrid, Point2i &p, Point3d &diffU, Point3d &diffV)
double	cartesianToOrganCoordsLong (Point3d cartesianCoords, std::map< int, Point3d > &bMap, Point3d &closestPoint)
bool	readAttr (CellAtlasData &m, const QByteArray &ba, size_t &pos)
bool	writeAttr (const CellAtlasData &m, QByteArray &ba)
bool	readAttr (CellAtlasConfig &data, const QByteArray &ba, size_t &pos)
bool	writeAttr (const CellAtlasConfig &data, QByteArray &ba)
void	writeAttrMaps (RootCellProcessing rcp, CellAtlasAttr *cellAtlasAttr, CellAtlasConfigAttr *cellAtlasConfigAttr)
bool	readAttr (CellDivisionAttr &m, const QByteArray &ba, size_t &pos)
bool	writeAttr (const CellDivisionAttr &m, QByteArray &ba)
bool	readAttr (DivisionDataNew &dd, const QByteArray &ba, size_t &pos)
bool	writeAttr (const DivisionDataNew &dd, QByteArray &ba)
std::vector< Triangle >	findCellTris (vvGraph &S, int cellLabel)
void	drawPlane (const Process &process, Mesh *m, DivisionPlane &vtxTris, Point3d scalingNormal=Point3d(0, 0, 0), double scalingFac=1)
void	simulateDivision2D (std::vector< vertex > &cellContour, Point3d &divP, Point3d divNormal, std::vector< P3dDouble > &samplingDirections, std::vector< CellDivision > &allDivisions, Point3d &shortestPlaneNrml, double &shortesPlaneDispl)
double	maxPlaneSimilarity (AttrMap< int, CellDivisionAttr > &cellDivs, CellDivisionAttr cda)
bool	writeCsvFile (QString filename, QString header, vector< vector< double > > &data)
	write a 2D array to a (csv) file More...
double	calcRatio (double value1, double value2)
	return the ratio ( = bigger value divided by smaller value) More...
double	avgCellSizeMGX3D (const cell &c)
	returns an approximation of the 3D cell size (the average of the distance of every vertex to the cell center) More...
double	divisionPlaneArea (Point3d cellCenter, const std::vector< Point3d > &v)
	returns the area of a polygon (=division plane) More...
double	divisionPlaneAreaMulti (Point3d cellCenter, const std::vector< std::vector< Point3d > > &vMulti)
	returns the summed area of multiple polygons (=division planes) More...
bool	findCell (cellGraph &C, cell &searchedCell, int label, int &maxLabel)
	returns whether a cell with the specified label exists, also provides the cell and the max Label of all cells More...
void	calcCellGraphJoinedCells (cellGraph &C, const cell &c1, const cell &c2)
	add the neighbors of c2 to the cell graph of c1 More...
void	copyCellGraph (CellTissue &orig, CellTissue &copy)
	copies the cell graph, used for simulating cell division (without altering the original) More...
std::vector< Point3d >	getSharedVtxs (const cell &c1, const cell &c2)
	returns the area of a polygon More...
std::set< Triangle >	getSharedTris (const cell &c1, const cell &c2)
double	calcTriArea (std::set< Triangle > &tris)
void	calcJoinedCell (const cell &c1, const cell &c2, vvGraph &result, bool simple)
	returns the area of a polygon More...
void	generateSamplingDirectionsNew (int nrPlanes, int centerVarSteps, double centerVarStepSize, std::vector< P3dDouble > &samplingDirections)
	returns the area of a polygon More...
void	generateSamplingDirections (double resolution, int centerVarSteps, double centerVarStepSize, std::vector< P3dDouble > &samplingDirections)
void	generateSamplingDirections (double resolution, int centerVarSteps, double centerVarStepSize, Point3d perpendicularPlane, std::set< Point3d > perpPlaneNormals2, bool enforceDivThroughNeighbor, std::vector< P3dDouble > &samplingDirections)
void	addCenterDisplacementTestCut (int centerVarSteps, double centerVarStepSize, Point3d cellCenter, Point3d perpendicularPlane, std::set< Point3d > perpPlaneNormals2, std::unordered_map< Point3d, Point3d > &wallCenter, std::unordered_map< Point3d, std::vector< Point3d > > wallPoints, std::vector< P3dDouble > &samplingDirections)
double	calcVolume (vector< Triangle > tris)
bool	planeSegmentIntersect (const Point3d &p, const Point3d &nrml, const Point3d &u1, const Point3d &u2, Point3d &intersectP)
void	findNeighbTris (cellGraph &C, const cell &c, std::map< cell, std::vector< Triangle > > &neighbTris)
void	cellTriNeighbors (cellGraph &C, const cell &c, std::map< Triangle, int > &trisNeighbMap)
double	estimateVolumeOpenBody (std::vector< Triangle > tris, set< vertex > &exposedVtxs)
void	estimateVolumeDaughterCells (std::vector< Triangle > &trisLeft, std::vector< Triangle > &trisRight, std::vector< Triangle > &trisSplit)
void	calcRandWalkBetweenness (std::map< IntInt, double > &neighborhoodWeights, std::map< int, int > &labelPosMap, std::vector< int > &orderedLabels, std::map< int, double > &cellBetweenessMap, bool useGPU)
void	calcRandWalkBetweenness (cellGraph &C, std::map< IntInt, double > &weights, std::map< cell, double > &cellBetweenessMap, bool useGPU, bool doRevCuthill)
void	calcRandWalkBetweenness (std::map< IntInt, double > &neighborhoodGraph, std::map< int, double > &labelBetweenessMap, bool useGPU)
void	separateIdenticalVtxs (const cell &c)
bool	planePolygonIntersect (Point3d planeNrml, Point3d planePos, std::vector< Point3d > polygonVtxs)
std::vector< Triangle >	getTrisOfCells (Mesh *m, int selectedLabel, bool parentMode)
std::vector< vertex >	getVtxsOfCells (Mesh *m, int selectedLabel, bool parentMode)
std::vector< vertex >	getOrRemoveCommonWall (Mesh *m, std::vector< vertex > &cellVtxs, bool removeCommon, bool includeEdgeOfShared)
std::vector< Triangle >	getOrRemoveCommonWall (Mesh *mesh, std::vector< Triangle > &cellTris, bool removeCommon, bool mergeDuplicated)
void	assembleCellFromWalls (vvGraph &S, std::vector< vertex > vtxs, std::vector< Point3i > tris, std::set< vertex > &borderVtxs, double mergingThreshold, int labelCounter, bool orientCheck)

Variables
mgx_EXPORT IntVtxMap *	vMap
	Maps for saveId for vertices and cells, created when file is read Globals required for overloads of readAttr and writeAttr for custom types. More...
mgx_EXPORT IntCellMap *	cMap
CU_HOST_DEVICE const const T	c1
CU_HOST_DEVICE const const T T	c2
CU_HOST_DEVICE const const T T T	c3
T	area2
	nrml
mgx_EXPORT MGXOpenGLFunctions *	glfuncs
mgx_EXPORT bool	DEBUG
const int	SAMPLES
mgxPython_EXPORT PyTypeObject	factory_type
mgxPython_EXPORT PyTypeObject	process_type
mgx_EXPORT size_t	vertex_counter
	Number used to enumerate the vertices of all types. More...
DivisionAnalysisData	dat

Detailed Description

Distributed matrix library.

Function prototypes for distributed object library.

Distributed object library.

Function prototypes for distributed matrix library.

This class allows VV graphs to be manipulated like vectors and matrices, with the computations being done on the GPU. It uses distributed object to move data back and forth that is stored in the properties of VVGraph vertices and edges. or stored in the attributes keyed by vertices and edges.

This class allows data that is stored in the properties of a VVGraph to be transferred to/from the GPU. The data can either be in the vertex data itself, or stored in the attributes keyed by vertices and edges.

This namespace contains all the API of MorphoGraphX

Typedef Documentation

BoundingBox3f

typedef BoundingBox<3, float> mgx::BoundingBox3f

Definition at line 142 of file Geometry.hpp.

BoundingBox3i

typedef BoundingBox<3, int> mgx::BoundingBox3i

Definition at line 141 of file Geometry.hpp.

BoundingBox3u

typedef BoundingBox<3, uint> mgx::BoundingBox3u

Definition at line 140 of file Geometry.hpp.

cCPair

typedef std::pair<cell,cell> mgx::cCPair

Definition at line 21 of file DivisionAnalysisUtils.hpp.

cell

typedef cellGraph::vertex_t mgx::cell

Type of a vertex.

Definition at line 122 of file Types.hpp.

CellAtlasAttr

typedef AttrMap<int, CellAtlasData> mgx::CellAtlasAttr

Definition at line 275 of file RootCellProcessing.hpp.

CellAtlasConfigAttr

typedef AttrMap<int, CellAtlasConfig> mgx::CellAtlasConfigAttr

Definition at line 276 of file RootCellProcessing.hpp.

CellBoolAttr

typedef AttrMap<cell, bool> mgx::CellBoolAttr

Definition at line 865 of file Attributes.hpp.

CellBoolMap

typedef std::unordered_map<cell, bool> mgx::CellBoolMap

Map of cell to bool.

Definition at line 180 of file Types.hpp.

CellCellMap

typedef std::unordered_map<cell, cell> mgx::CellCellMap

Map of cell to cell.

Definition at line 173 of file Types.hpp.

CellCellPair

typedef std::pair<cell, cell> mgx::CellCellPair

Definition at line 174 of file Types.hpp.

CellColorbAttr

typedef AttrMap<cell, Colorb> mgx::CellColorbAttr

Definition at line 869 of file Attributes.hpp.

cellDPair

typedef std::pair<cell, double> mgx::cellDPair

Definition at line 23 of file DivisionAnalysisUtils.hpp.

CellFloatAttr

typedef AttrMap<cell, float> mgx::CellFloatAttr

Definition at line 866 of file Attributes.hpp.

CellFloatMap

typedef std::unordered_map<cell, float> mgx::CellFloatMap

Map of cell to float.

Definition at line 182 of file Types.hpp.

cellGraph

typedef VVGraph<mgx::CellData, mgx::WallData> mgx::cellGraph

Type of the cell graph.

Definition at line 120 of file Types.hpp.

CellIntAttr

typedef AttrMap<cell, int> mgx::CellIntAttr

Definition at line 864 of file Attributes.hpp.

CellIntMap

typedef std::unordered_map<cell, int> mgx::CellIntMap

Map of cell to int.

Definition at line 178 of file Types.hpp.

CellMatrix3fAttr

typedef AttrMap<cell, Matrix3f> mgx::CellMatrix3fAttr

Definition at line 872 of file Attributes.hpp.

CellMatrix3fMap

typedef std::unordered_map<cell, Matrix3f> mgx::CellMatrix3fMap

Map of cell to Matrix3f.

Definition at line 188 of file Types.hpp.

cellMorphLandscape

typedef std::map<int,std::map<int,double> > mgx::cellMorphLandscape

Definition at line 30 of file CellAtlasUtils.hpp.

CellPoint2fAttr

typedef AttrMap<cell, Point2f> mgx::CellPoint2fAttr

Definition at line 867 of file Attributes.hpp.

CellPoint2fMap

typedef std::unordered_map<cell, Point2f> mgx::CellPoint2fMap

Map of cell to Point2f.

Definition at line 184 of file Types.hpp.

CellPoint3fAttr

typedef AttrMap<cell, Point3f> mgx::CellPoint3fAttr

Definition at line 868 of file Attributes.hpp.

CellPoint3fMap

typedef std::unordered_map<cell, Point3f> mgx::CellPoint3fMap

Map of cell to Point3f.

Definition at line 186 of file Types.hpp.

CellQStringAttr

typedef AttrMap<cell, QString> mgx::CellQStringAttr

Definition at line 874 of file Attributes.hpp.

CellSet

typedef std::unordered_set<cell> mgx::CellSet

Set of cells.

Definition at line 126 of file Types.hpp.

CellSetPair

typedef std::pair<std::set<cell>, std::set<cell> > mgx::CellSetPair

Definition at line 20 of file DivisionAnalysisUtils.hpp.

CellSymTensorAttr

typedef AttrMap<cell, SymmetricTensor> mgx::CellSymTensorAttr

Definition at line 873 of file Attributes.hpp.

CellVec

typedef std::vector<cell> mgx::CellVec

Vector of cells.

Definition at line 128 of file Types.hpp.

CellVec2ColorbAttr

typedef AttrMap<cell, Vec2Colorb> mgx::CellVec2ColorbAttr

Definition at line 870 of file Attributes.hpp.

CellVec3ColorbAttr

typedef AttrMap<cell, Vec3Colorb> mgx::CellVec3ColorbAttr

Definition at line 871 of file Attributes.hpp.

Color3f

typedef Color< float > mgx::Color3f

Definition at line 32 of file ClipRegion.hpp.

Colorb

typedef Color<uchar> mgx::Colorb

Definition at line 318 of file Color.hpp.

ColorbVec

typedef std::vector<Colorb> mgx::ColorbVec

Definition at line 319 of file Color.hpp.

Colorf

typedef Color< float > mgx::Colorf

Definition at line 317 of file Color.hpp.

DCountIter

typedef thrust::counting_iterator<int, thrust::device_space_tag> mgx::DCountIter

Definition at line 67 of file Cuda.hpp.

DeviceP3d

typedef thrust::device_ptr<Point3d> mgx::DeviceP3d

Definition at line 60 of file Cuda.hpp.

DevicePd

typedef thrust::device_ptr<double> mgx::DevicePd

Definition at line 59 of file Cuda.hpp.

DevicePi

typedef thrust::device_ptr<int> mgx::DevicePi

Definition at line 57 of file Cuda.hpp.

DevicePM3d

typedef thrust::device_ptr<Matrix3d> mgx::DevicePM3d

Definition at line 61 of file Cuda.hpp.

DevicePui

typedef thrust::device_ptr<uint> mgx::DevicePui

Definition at line 58 of file Cuda.hpp.

DeviceV12u

typedef thrust::device_vector<Point12u> mgx::DeviceV12u

Definition at line 64 of file ThrustTypes.hpp.

DeviceV1d

typedef thrust::device_vector<Point1d> mgx::DeviceV1d

Definition at line 72 of file ThrustTypes.hpp.

DeviceV1u

typedef thrust::device_vector<Point1u> mgx::DeviceV1u

Definition at line 59 of file ThrustTypes.hpp.

DeviceV2d

typedef thrust::device_vector<Point2d> mgx::DeviceV2d

Definition at line 73 of file ThrustTypes.hpp.

DeviceV2i

typedef thrust::device_vector<Point2i> mgx::DeviceV2i

Definition at line 56 of file ThrustTypes.hpp.

DeviceV2u

typedef thrust::device_vector<Point2u> mgx::DeviceV2u

Definition at line 60 of file ThrustTypes.hpp.

DeviceV30u

typedef thrust::device_vector<Point30u> mgx::DeviceV30u

Definition at line 65 of file ThrustTypes.hpp.

DeviceV3d

typedef thrust::device_vector<Point3d> mgx::DeviceV3d

Definition at line 74 of file ThrustTypes.hpp.

DeviceV3f

typedef thrust::device_vector<Point3f> mgx::DeviceV3f

Definition at line 68 of file ThrustTypes.hpp.

DeviceV3u

typedef thrust::device_vector<Point3u> mgx::DeviceV3u

Definition at line 61 of file ThrustTypes.hpp.

DeviceV4d

typedef thrust::device_vector<Point4d> mgx::DeviceV4d

Definition at line 75 of file ThrustTypes.hpp.

DeviceV4f

typedef thrust::device_vector<Point4f> mgx::DeviceV4f

Definition at line 69 of file ThrustTypes.hpp.

DeviceV4u

typedef thrust::device_vector<Point4u> mgx::DeviceV4u

Definition at line 62 of file ThrustTypes.hpp.

DeviceV6d

typedef thrust::device_vector<Point6d> mgx::DeviceV6d

Definition at line 76 of file ThrustTypes.hpp.

DeviceV6u

typedef thrust::device_vector<Point6u> mgx::DeviceV6u

Definition at line 63 of file ThrustTypes.hpp.

DeviceV9d

typedef thrust::device_vector<Point9d> mgx::DeviceV9d

Definition at line 77 of file ThrustTypes.hpp.

DeviceVbool

typedef thrust::device_vector<bool> mgx::DeviceVbool

Definition at line 53 of file ThrustTypes.hpp.

DeviceVd

typedef thrust::device_vector<double> mgx::DeviceVd

Definition at line 71 of file ThrustTypes.hpp.

DeviceVf

typedef thrust::device_vector<float> mgx::DeviceVf

Definition at line 67 of file ThrustTypes.hpp.

DeviceVM1d

typedef thrust::device_vector<Matrix1d> mgx::DeviceVM1d

Definition at line 79 of file ThrustTypes.hpp.

DeviceVM2d

typedef thrust::device_vector<Matrix2d> mgx::DeviceVM2d

Definition at line 80 of file ThrustTypes.hpp.

DeviceVM3d

typedef thrust::device_vector<Matrix3d> mgx::DeviceVM3d

Definition at line 81 of file ThrustTypes.hpp.

DeviceVM6x3d

typedef thrust::device_vector<Matrix6x3d> mgx::DeviceVM6x3d

Definition at line 82 of file ThrustTypes.hpp.

DeviceVu

typedef thrust::device_vector<uint> mgx::DeviceVu

Definition at line 58 of file ThrustTypes.hpp.

DeviceVus

typedef thrust::device_vector<ushort> mgx::DeviceVus

Definition at line 55 of file ThrustTypes.hpp.

DistNhbdC

typedef DistNhbd<cellGraph> mgx::DistNhbdC

Definition at line 24 of file Solver.hpp.

DMatrix2d

typedef DMatrix<DistNhbdC,Matrix2d,Point2d,double> mgx::DMatrix2d

Definition at line 27 of file Solver.hpp.

DVector2d

typedef DVector<DistNhbdC,Matrix2d,Point2d,double> mgx::DVector2d

Definition at line 26 of file Solver.hpp.

DVM2f

typedef thrust::host_vector<Matrix2d> mgx::DVM2f

Definition at line 29 of file Solver.hpp.

edge

typedef vvGraph::edge_t mgx::edge

Type of an edge.

Definition at line 53 of file Misc.hpp.

edge_identity_t

typedef intptr_t mgx::edge_identity_t

Type of the identifier of an edge.

Definition at line 32 of file Edge.hpp.

EdgeBoolAttr

typedef AttrMap<edge, bool> mgx::EdgeBoolAttr

Definition at line 853 of file Attributes.hpp.

EdgeColorbAttr

typedef AttrMap<edge, Colorb> mgx::EdgeColorbAttr

Definition at line 857 of file Attributes.hpp.

EdgeFloatAttr

typedef AttrMap<edge, float> mgx::EdgeFloatAttr

Definition at line 854 of file Attributes.hpp.

EdgeIntAttr

typedef AttrMap<edge, int> mgx::EdgeIntAttr

Definition at line 852 of file Attributes.hpp.

EdgeMatrix3fAttr

typedef AttrMap<edge, Matrix3f> mgx::EdgeMatrix3fAttr

Definition at line 860 of file Attributes.hpp.

EdgePoint2fAttr

typedef AttrMap<edge, Point2f> mgx::EdgePoint2fAttr

Definition at line 855 of file Attributes.hpp.

EdgePoint3fAttr

typedef AttrMap<edge, Point3f> mgx::EdgePoint3fAttr

Definition at line 856 of file Attributes.hpp.

EdgeQStringAttr

typedef AttrMap<edge, QString> mgx::EdgeQStringAttr

Definition at line 862 of file Attributes.hpp.

EdgeSymTensorAttr

typedef AttrMap<edge, SymmetricTensor> mgx::EdgeSymTensorAttr

Definition at line 861 of file Attributes.hpp.

EdgeVec2ColorbAttr

typedef AttrMap<edge, Vec2Colorb> mgx::EdgeVec2ColorbAttr

Definition at line 858 of file Attributes.hpp.

EdgeVec3ColorbAttr

typedef AttrMap<edge, Vec3Colorb> mgx::EdgeVec3ColorbAttr

Definition at line 859 of file Attributes.hpp.

FileDataVector

typedef std::vector<FileDataType> mgx::FileDataVector

Definition at line 73 of file DataAnalyzer.hpp.

FileEFactorDataVector

typedef std::vector<FileEFactorDataType> mgx::FileEFactorDataVector

Definition at line 74 of file DataAnalyzer.hpp.

FilenameVector

typedef std::vector<QString> mgx::FilenameVector

Definition at line 78 of file DataAnalyzer.hpp.

FloatVec

typedef std::vector<float> mgx::FloatVec

Vector of floats.

Definition at line 82 of file Types.hpp.

HostV12u

typedef thrust::host_vector<Point12u> mgx::HostV12u

Definition at line 32 of file ThrustTypes.hpp.

HostV1d

typedef thrust::host_vector<Point1d> mgx::HostV1d

Definition at line 40 of file ThrustTypes.hpp.

HostV1u

typedef thrust::host_vector<Point1u> mgx::HostV1u

Definition at line 27 of file ThrustTypes.hpp.

HostV2d

typedef thrust::host_vector<Point2d> mgx::HostV2d

Definition at line 41 of file ThrustTypes.hpp.

HostV2i

typedef thrust::host_vector<Point2i> mgx::HostV2i

Definition at line 24 of file ThrustTypes.hpp.

HostV2u

typedef thrust::host_vector<Point2u> mgx::HostV2u

Definition at line 28 of file ThrustTypes.hpp.

HostV30u

typedef thrust::host_vector<Point30u> mgx::HostV30u

Definition at line 33 of file ThrustTypes.hpp.

HostV3d

typedef thrust::host_vector<Point3d> mgx::HostV3d

Definition at line 42 of file ThrustTypes.hpp.

HostV3f

typedef thrust::host_vector<Point3f> mgx::HostV3f

Definition at line 36 of file ThrustTypes.hpp.

HostV3u

typedef thrust::host_vector<Point3u> mgx::HostV3u

Definition at line 29 of file ThrustTypes.hpp.

HostV4d

typedef thrust::host_vector<Point4d> mgx::HostV4d

Definition at line 43 of file ThrustTypes.hpp.

HostV4f

typedef thrust::host_vector<Point4f> mgx::HostV4f

Definition at line 37 of file ThrustTypes.hpp.

HostV4u

typedef thrust::host_vector<Point4u> mgx::HostV4u

Definition at line 30 of file ThrustTypes.hpp.

HostV6d

typedef thrust::host_vector<Point6d> mgx::HostV6d

Definition at line 44 of file ThrustTypes.hpp.

HostV6u

typedef thrust::host_vector<Point6u> mgx::HostV6u

Definition at line 31 of file ThrustTypes.hpp.

HostV9d

typedef thrust::host_vector<Point9d> mgx::HostV9d

Definition at line 45 of file ThrustTypes.hpp.

HostVbool

typedef thrust::host_vector<bool> mgx::HostVbool

Definition at line 21 of file ThrustTypes.hpp.

HostVd

typedef thrust::host_vector<double> mgx::HostVd

Definition at line 39 of file ThrustTypes.hpp.

HostVf

typedef thrust::host_vector<float> mgx::HostVf

Definition at line 35 of file ThrustTypes.hpp.

HostVM1d

typedef thrust::host_vector<Matrix1d> mgx::HostVM1d

Definition at line 47 of file ThrustTypes.hpp.

HostVM2d

typedef thrust::host_vector<Matrix2d> mgx::HostVM2d

Definition at line 48 of file ThrustTypes.hpp.

HostVM3d

typedef thrust::host_vector<Matrix3d> mgx::HostVM3d

Definition at line 49 of file ThrustTypes.hpp.

HostVM6x3d

typedef thrust::host_vector<Matrix6x3d> mgx::HostVM6x3d

Definition at line 50 of file ThrustTypes.hpp.

HostVu

typedef thrust::host_vector<uint> mgx::HostVu

Definition at line 26 of file ThrustTypes.hpp.

HostVus

typedef thrust::host_vector<ushort> mgx::HostVus

Definition at line 23 of file ThrustTypes.hpp.

HVec3F

typedef thrust::host_vector<Point3f> mgx::HVec3F

Definition at line 26 of file CudaExport.hpp.

HVec3U

typedef thrust::host_vector<Point3u> mgx::HVec3U

Definition at line 25 of file CudaExport.hpp.

HVec4F

typedef thrust::host_vector<Point4f> mgx::HVec4F

Definition at line 27 of file CudaExport.hpp.

HVecF

typedef thrust::host_vector<float> mgx::HVecF

Definition at line 24 of file CudaExport.hpp.

HVecU

typedef thrust::host_vector<uint> mgx::HVecU

Definition at line 22 of file CudaExport.hpp.

HVecUS

typedef thrust::host_vector< ushort > mgx::HVecUS

Definition at line 23 of file CudaExport.hpp.

HVM2f

typedef std::vector<Matrix2d> mgx::HVM2f

Definition at line 30 of file Solver.hpp.

IntCellGraphMap

typedef std::unordered_map<int, cellGraph> mgx::IntCellGraphMap

Map of an integer to a cellGraph.

Definition at line 171 of file Types.hpp.

IntCellMap

typedef std::unordered_map<int, cell> mgx::IntCellMap

Int to cell map.

Definition at line 176 of file Types.hpp.

IntColorbAttr

typedef AttrMap<int, Colorb> mgx::IntColorbAttr

Definition at line 831 of file Attributes.hpp.

IntDoubleMap

typedef std::unordered_map<int, double> mgx::IntDoubleMap

Map of an integer to a double.

Definition at line 55 of file Types.hpp.

IntDoublePair

typedef std::pair<int, double> mgx::IntDoublePair

Element in IntDoubleMap.

Definition at line 57 of file Types.hpp.

IntFloatAttr

typedef AttrMap<int, float> mgx::IntFloatAttr

Definition at line 829 of file Attributes.hpp.

IntFloatMap

typedef std::unordered_map<int, float> mgx::IntFloatMap

Map of an integer to a float.

Definition at line 40 of file Types.hpp.

IntFloatPair

typedef std::pair<int, float> mgx::IntFloatPair

Element in IntFloatMap.

Definition at line 42 of file Types.hpp.

IntHVec3UMap

typedef std::map<int, HVec3U> mgx::IntHVec3UMap

Definition at line 22 of file MeshProcessSignal.hpp.

IntHVec3uMap

typedef std::unordered_map< int, HVec3U > mgx::IntHVec3uMap

Map of an integer to a host vector of 3 unsigned integers.

Definition at line 38 of file Mesh.hpp.

IntHVec3uPair

typedef std::pair< int, HVec3U > mgx::IntHVec3uPair

Element in IntHVec3uMap.

Definition at line 40 of file Mesh.hpp.

IntInt

typedef std::pair< int, int > mgx::IntInt

Definition at line 27 of file GraphAlgorithms.hpp.

IntIntAttr

typedef AttrMap<int, int> mgx::IntIntAttr

Definition at line 828 of file Attributes.hpp.

IntIntDouble

typedef std::pair< IntInt, double > mgx::IntIntDouble

Definition at line 28 of file GraphAlgorithms.hpp.

IntIntDouPair

typedef std::pair< IntInt, double > mgx::IntIntDouPair

Definition at line 22 of file GraphUtils.hpp.

IntIntFloatAttr

typedef AttrMap<IntIntPair, float> mgx::IntIntFloatAttr

Definition at line 837 of file Attributes.hpp.

IntIntFloatMap

typedef std::unordered_map<IntIntPair, float> mgx::IntIntFloatMap

Map of a pair of integers to a float.

Definition at line 95 of file Types.hpp.

IntIntFloatPair

typedef std::pair<IntIntPair, float> mgx::IntIntFloatPair

Element in IntIntFloatMap.

Definition at line 92 of file Types.hpp.

IntIntMap

typedef std::unordered_map<int, int> mgx::IntIntMap

Map of an integer to another one.

Definition at line 64 of file Types.hpp.

IntIntPair

typedef std::pair<int, int> mgx::IntIntPair

Element in IntIntMap.

Definition at line 66 of file Types.hpp.

IntIntPoint3fAttr

typedef AttrMap<IntIntPair, Point3f> mgx::IntIntPoint3fAttr

Definition at line 838 of file Attributes.hpp.

IntIntSetMap

typedef std::map<int, IntSet> mgx::IntIntSetMap

Map of an integer to a set of integers.

Definition at line 88 of file Types.hpp.

IntIntSetPair

typedef std::pair<int, IntSet> mgx::IntIntSetPair

Element in IntIntSetMap.

Definition at line 86 of file Types.hpp.

IntIntVIdSetMap

typedef std::map<IntIntPair, VIdSet> mgx::IntIntVIdSetMap

Map of a pair of integers to a set of vertex ids.

Definition at line 97 of file Types.hpp.

IntIntVIdSetPair

typedef std::pair<IntIntPair, VIdSet> mgx::IntIntVIdSetPair

Element in IntIntVIdSetMap.

Definition at line 90 of file Types.hpp.

IntMatrix3fAttr

typedef AttrMap<int, Matrix3f> mgx::IntMatrix3fAttr

Definition at line 834 of file Attributes.hpp.

IntMatrix3fMap

typedef std::unordered_map<int, Matrix3f> mgx::IntMatrix3fMap

Map of an integer to a 3x3 matrix.

Definition at line 100 of file Types.hpp.

IntMatrix3fPair

typedef std::pair<int, Matrix3f> mgx::IntMatrix3fPair

Element in IntMatrix3x3fMap.

Definition at line 102 of file Types.hpp.

IntPoint3dMap

typedef std::unordered_map<int, Point3d> mgx::IntPoint3dMap

Map of an integer to a double 3D point.

Definition at line 59 of file Types.hpp.

IntPoint3dPair

typedef std::pair<int, Point3d> mgx::IntPoint3dPair

Element in IntPoint3dMap.

Definition at line 61 of file Types.hpp.

IntPoint3fAttr

typedef AttrMap<int, Point3f> mgx::IntPoint3fAttr

Definition at line 830 of file Attributes.hpp.

IntPoint3fMap

typedef std::unordered_map<int, Point3f> mgx::IntPoint3fMap

Map of an integer to a 3D point.

Definition at line 45 of file Types.hpp.

IntPoint3fPair

typedef std::pair<int, Point3f> mgx::IntPoint3fPair

Element in IntPoint3fMap.

Definition at line 47 of file Types.hpp.

IntQStringAttr

typedef AttrMap<int, QString> mgx::IntQStringAttr

Definition at line 836 of file Attributes.hpp.

IntSet

typedef std::set<int> mgx::IntSet

Set of integers.

Definition at line 78 of file Types.hpp.

IntSymTensorAttr

typedef AttrMap<int, SymmetricTensor> mgx::IntSymTensorAttr

Definition at line 835 of file Attributes.hpp.

IntSymTensorMap

typedef std::unordered_map<int, SymmetricTensor> mgx::IntSymTensorMap

Map an integer to a symmetric tensor.

Definition at line 104 of file Types.hpp.

IntSymTensorPair

typedef std::pair<int, SymmetricTensor> mgx::IntSymTensorPair

Element in IntSymTensorMap.

Definition at line 106 of file Types.hpp.

intToVec

typedef std::map<int, std::vector<int> > mgx::intToVec

Definition at line 32 of file CellAtlasUtils.hpp.

IntVec

typedef std::vector<int> mgx::IntVec

Vector of integers.

Definition at line 80 of file Types.hpp.

IntVec2ColorbAttr

typedef AttrMap<int, Vec2Colorb> mgx::IntVec2ColorbAttr

Definition at line 832 of file Attributes.hpp.

IntVec3ColorbAttr

typedef AttrMap<int, Vec3Colorb> mgx::IntVec3ColorbAttr

Definition at line 833 of file Attributes.hpp.

IntVIdSetMap

typedef std::map<int, VIdSet> mgx::IntVIdSetMap

Map of an integer to a set of vertex ids.

Definition at line 74 of file Types.hpp.

IntVIdSetPair

typedef std::pair<int, VIdSet> mgx::IntVIdSetPair

Element in IntVIdSetMap.

Definition at line 76 of file Types.hpp.

IntVtxMap

typedef std::unordered_map<int, vertex> mgx::IntVtxMap

Int to vertex map.

Definition at line 146 of file Types.hpp.

IntVtxPair

typedef std::pair<int, vertex> mgx::IntVtxPair

Definition at line 147 of file Types.hpp.

IntVVGraphMap

typedef std::unordered_map<int, vvGraph> mgx::IntVVGraphMap

Map of an integer to a vvGraph.

Definition at line 144 of file Types.hpp.

IntVVGraphPair

typedef std::pair<int, vvGraph> mgx::IntVVGraphPair

Integer, VVGraph pair.

Definition at line 139 of file Types.hpp.

ivec1

typedef Vector<1, GLint> mgx::ivec1

Definition at line 32 of file Shader.hpp.

ivec2

typedef Vector<2, GLint> mgx::ivec2

Definition at line 33 of file Shader.hpp.

ivec3

typedef Vector<3, GLint> mgx::ivec3

Definition at line 34 of file Shader.hpp.

ivec4

typedef Vector<4, GLint> mgx::ivec4

Definition at line 35 of file Shader.hpp.

labelVertexMap

typedef std::map<int, std::vector<vertex> > mgx::labelVertexMap

Definition at line 16 of file CellAtlasUtils.hpp.

labelVertexVecPair

typedef std::pair<int, std::vector<vertex> > mgx::labelVertexVecPair

Definition at line 18 of file CellAtlasUtils.hpp.

mat2

typedef Matrix<2, 2, GLfloat> mgx::mat2

Definition at line 40 of file Shader.hpp.

mat3

typedef Matrix<3, 3, GLfloat> mgx::mat3

Definition at line 41 of file Shader.hpp.

mat4

typedef Matrix<4, 4, GLfloat> mgx::mat4

Definition at line 42 of file Shader.hpp.

Matrix12d

typedef Matrix<12, 12, double> mgx::Matrix12d

Definition at line 136 of file Geometry.hpp.

Matrix12x3d

typedef Matrix<12, 3, double> mgx::Matrix12x3d

Definition at line 135 of file Geometry.hpp.

Matrix18d

typedef Matrix<18, 18, double> mgx::Matrix18d

Definition at line 138 of file Geometry.hpp.

Matrix1d

typedef Matrix<1, 1, double> mgx::Matrix1d

Definition at line 105 of file Geometry.hpp.

Matrix2d

typedef Matrix<2, 2, double> mgx::Matrix2d

Definition at line 106 of file Geometry.hpp.

Matrix2f

typedef Matrix<2, 2, float> mgx::Matrix2f

Definition at line 95 of file Geometry.hpp.

Matrix2u

typedef Matrix<2, 2, uint> mgx::Matrix2u

Definition at line 99 of file Geometry.hpp.

Matrix2x3d

typedef Matrix<2, 3, double> mgx::Matrix2x3d

Definition at line 107 of file Geometry.hpp.

Matrix2x6d

typedef Matrix<2, 6, double> mgx::Matrix2x6d

Definition at line 108 of file Geometry.hpp.

Matrix3d

typedef Matrix< 3, 3, double > mgx::Matrix3d

Definition at line 111 of file Geometry.hpp.

Matrix3f

typedef Matrix<3, 3, float> mgx::Matrix3f

Definition at line 96 of file Geometry.hpp.

Matrix3u

typedef Matrix<3, 3, uint> mgx::Matrix3u

Definition at line 100 of file Geometry.hpp.

Matrix3x12d

typedef Matrix<3, 12, double> mgx::Matrix3x12d

Definition at line 114 of file Geometry.hpp.

Matrix3x18d

typedef Matrix<3, 18, double> mgx::Matrix3x18d

Definition at line 115 of file Geometry.hpp.

Matrix3x2d

typedef Matrix<3, 2, double> mgx::Matrix3x2d

Definition at line 110 of file Geometry.hpp.

Matrix3x4d

typedef Matrix<3, 4, double> mgx::Matrix3x4d

Definition at line 112 of file Geometry.hpp.

Matrix3x6d

typedef Matrix<3, 6, double> mgx::Matrix3x6d

Definition at line 113 of file Geometry.hpp.

Matrix4d

typedef Matrix<4, 4, double> mgx::Matrix4d

Definition at line 119 of file Geometry.hpp.

Matrix4f

typedef Matrix<4, 4, float> mgx::Matrix4f

Definition at line 97 of file Geometry.hpp.

Matrix4u

typedef Matrix<4, 4, uint> mgx::Matrix4u

Definition at line 101 of file Geometry.hpp.

Matrix4x2d

typedef Matrix<4, 2, double> mgx::Matrix4x2d

Definition at line 117 of file Geometry.hpp.

Matrix4x3d

typedef Matrix<4, 3, double> mgx::Matrix4x3d

Definition at line 118 of file Geometry.hpp.

Matrix4x3u

typedef Matrix<4, 3, uint> mgx::Matrix4x3u

Definition at line 102 of file Geometry.hpp.

Matrix4x6d

typedef Matrix<4, 6, double> mgx::Matrix4x6d

Definition at line 120 of file Geometry.hpp.

Matrix5x3d

typedef Matrix<5, 3, double> mgx::Matrix5x3d

Definition at line 122 of file Geometry.hpp.

Matrix6d

typedef Matrix<6, 6, double> mgx::Matrix6d

Definition at line 125 of file Geometry.hpp.

Matrix6x12d

typedef Matrix<6, 12, double> mgx::Matrix6x12d

Definition at line 127 of file Geometry.hpp.

Matrix6x18d

typedef Matrix<6, 18, double> mgx::Matrix6x18d

Definition at line 128 of file Geometry.hpp.

Matrix6x3d

typedef Matrix<6, 3, double> mgx::Matrix6x3d

Definition at line 126 of file Geometry.hpp.

Matrix6x3u

typedef Matrix<6, 3, uint> mgx::Matrix6x3u

Definition at line 103 of file Geometry.hpp.

Matrix9d

typedef Matrix<9, 9, double> mgx::Matrix9d

Definition at line 132 of file Geometry.hpp.

Matrix9x18d

typedef Matrix<9, 18, double> mgx::Matrix9x18d

Definition at line 133 of file Geometry.hpp.

Matrix9x3d

typedef Matrix< 9, 3, double > mgx::Matrix9x3d

Definition at line 130 of file Geometry.hpp.

MGXOpenGLFunctions

typedef QOpenGLFunctions_3_0 mgx::MGXOpenGLFunctions

Definition at line 25 of file GL.hpp.

P2iDMap

typedef std::map<Point2i, double> mgx::P2iDMap

Definition at line 34 of file CellAtlasUtils.hpp.

P2iDPair

typedef std::pair<Point2i, double> mgx::P2iDPair

Definition at line 35 of file CellAtlasUtils.hpp.

P3dboolPair

typedef std::pair<Point3d, bool> mgx::P3dboolPair

Definition at line 22 of file DivisionAnalysisUtils.hpp.

P3dDD

typedef std::pair<P3dDouble, double> mgx::P3dDD

Definition at line 26 of file DivisionAnalysisUtils.hpp.

P3dDouble

typedef std::pair<Point3d, double> mgx::P3dDouble

Definition at line 17 of file DivisionAnalysisUtils.hpp.

P3dInt

typedef std::pair<Point3d, int> mgx::P3dInt

Definition at line 25 of file DivisionAnalysisUtils.hpp.

P3dP3d

typedef std::pair<Point3d,Point3d> mgx::P3dP3d

Definition at line 27 of file DivisionAnalysisUtils.hpp.

PlaneNrmlPoint

typedef std::pair<Point3d, Point3d> mgx::PlaneNrmlPoint

Definition at line 208 of file DivisionAnalysisUtils.hpp.

Point12d

typedef Vector<12, double> mgx::Point12d

Definition at line 63 of file Geometry.hpp.

Point12f

typedef Vector<12, float> mgx::Point12f

Definition at line 52 of file Geometry.hpp.

Point12u

typedef Vector<12,uint> mgx::Point12u

Definition at line 79 of file Geometry.hpp.

Point16d

typedef Vector<16, double> mgx::Point16d

Definition at line 64 of file Geometry.hpp.

Point18d

typedef Vector<18, double> mgx::Point18d

Definition at line 65 of file Geometry.hpp.

Point1d

typedef Vector<1, double> mgx::Point1d

Definition at line 54 of file Geometry.hpp.

Point1u

typedef Vector<1, uint> mgx::Point1u

Definition at line 73 of file Geometry.hpp.

Point2d

typedef Vector<2, double> mgx::Point2d

Definition at line 55 of file Geometry.hpp.

Point2f

typedef Vector< 2, float > mgx::Point2f

Definition at line 19 of file ColorMap.hpp.

Point2fVec

typedef std::vector<Point2f> mgx::Point2fVec

Vector of Point2f.

Definition at line 84 of file Types.hpp.

Point2i

typedef Vector< 2, int > mgx::Point2i

Definition at line 22 of file CuttingSurface.hpp.

Point2s

typedef Vector<2, size_t> mgx::Point2s

Definition at line 86 of file Geometry.hpp.

Point2u

typedef Vector<2, uint> mgx::Point2u

Definition at line 74 of file Geometry.hpp.

Point30u

typedef Vector<30,uint> mgx::Point30u

Definition at line 80 of file Geometry.hpp.

Point3b

typedef Vector<3, bool> mgx::Point3b

Definition at line 37 of file Types.hpp.

Point3d

typedef Vector< 3, double > mgx::Point3d

Definition at line 56 of file Geometry.hpp.

Point3dIntMap

typedef std::map<Point3d, int> mgx::Point3dIntMap

Map of Point3d to int.

Definition at line 50 of file Types.hpp.

Point3dIntPair

typedef std::pair<Point3d, int> mgx::Point3dIntPair

Element in Point3dIntMap.

Definition at line 52 of file Types.hpp.

Point3f

typedef Vector< 3, float > mgx::Point3f

Definition at line 25 of file CuttingSurface.hpp.

Point3GLub

typedef Vector< 3, GLubyte > mgx::Point3GLub

Definition at line 43 of file ImageData.hpp.

Point3GLui

typedef Vector<3, GLuint> mgx::Point3GLui

Definition at line 56 of file Misc.hpp.

Point3i

typedef Vector<3, int> mgx::Point3i

Definition at line 68 of file Geometry.hpp.

Point3iIntSetMap

typedef std::map<Point3i, std::set<int> > mgx::Point3iIntSetMap

calculate properties of the neighborhood of a vvGraph such as: cell wall area, shared wall areas, nr of cells of a vertex and individual wall labels

Parameters

S	vvGraph
tolerance	max dis to treat vtxs as the same
info	output information

Definition at line 237 of file GraphUtils.hpp.

Point3iIntSetPair

typedef std::pair<Point3i, std::set<int> > mgx::Point3iIntSetPair

Definition at line 238 of file GraphUtils.hpp.

Point3s

typedef Vector<3, size_t> mgx::Point3s

Definition at line 87 of file Geometry.hpp.

Point3u

typedef Vector< 3, unsigned int > mgx::Point3u

Definition at line 75 of file Geometry.hpp.

Point3uc

typedef Vector<3, uchar> mgx::Point3uc

Definition at line 92 of file Geometry.hpp.

Point3ul

typedef Vector<3, ulong> mgx::Point3ul

Definition at line 84 of file Geometry.hpp.

Point3us

typedef Vector< 3, ushort > mgx::Point3us

Definition at line 82 of file Geometry.hpp.

Point4d

typedef Vector<4, double> mgx::Point4d

Definition at line 57 of file Geometry.hpp.

Point4f

typedef Vector< 4, float > mgx::Point4f

Definition at line 20 of file ColorMap.hpp.

Point4GLub

typedef Vector<4, GLubyte> mgx::Point4GLub

Definition at line 59 of file Misc.hpp.

Point4GLui

typedef Vector<4, GLuint> mgx::Point4GLui

Definition at line 57 of file Misc.hpp.

Point4i

typedef Vector<4, int> mgx::Point4i

Definition at line 69 of file Geometry.hpp.

Point4s

typedef Vector<4, size_t> mgx::Point4s

Definition at line 88 of file Geometry.hpp.

Point4u

typedef Vector<4, uint> mgx::Point4u

Definition at line 76 of file Geometry.hpp.

Point4v

typedef Vector<4, vertex> mgx::Point4v

Definition at line 40 of file ImageData.hpp.

Point5d

typedef Vector<5, double> mgx::Point5d

Definition at line 58 of file Geometry.hpp.

Point5f

typedef Vector<5, float> mgx::Point5f

Definition at line 50 of file Geometry.hpp.

Point5i

typedef Vector<5, int> mgx::Point5i

Definition at line 70 of file Geometry.hpp.

Point5s

typedef Vector<5, size_t> mgx::Point5s

Definition at line 89 of file Geometry.hpp.

Point5u

typedef Vector<5, uint> mgx::Point5u

Definition at line 77 of file Geometry.hpp.

Point6d

typedef Vector< 6, double > mgx::Point6d

Definition at line 59 of file Geometry.hpp.

Point6f

typedef Vector<6, float> mgx::Point6f

Definition at line 51 of file Geometry.hpp.

Point6i

typedef Vector<6, int> mgx::Point6i

Definition at line 71 of file Geometry.hpp.

Point6s

typedef Vector<6, size_t> mgx::Point6s

Definition at line 90 of file Geometry.hpp.

Point6u

typedef Vector<6, uint> mgx::Point6u

Definition at line 78 of file Geometry.hpp.

Point8d

typedef Vector<8, double> mgx::Point8d

Definition at line 61 of file Geometry.hpp.

Point9d

typedef Vector<9, double> mgx::Point9d

Definition at line 62 of file Geometry.hpp.

QStringColorbAttr

typedef AttrMap<QString, Colorb> mgx::QStringColorbAttr

Definition at line 903 of file Attributes.hpp.

QStringFloatAttr

typedef AttrMap<QString, float> mgx::QStringFloatAttr

Definition at line 901 of file Attributes.hpp.

QStringIntAttr

typedef AttrMap<QString, int> mgx::QStringIntAttr

Definition at line 900 of file Attributes.hpp.

QStringMatrix3fAttr

typedef AttrMap<QString, Matrix3f> mgx::QStringMatrix3fAttr

Definition at line 906 of file Attributes.hpp.

QStringPoint3fAttr

typedef AttrMap<QString, Point3f> mgx::QStringPoint3fAttr

Definition at line 902 of file Attributes.hpp.

QStringQStringAttr

typedef AttrMap<QString, QString> mgx::QStringQStringAttr

Definition at line 908 of file Attributes.hpp.

QStringSymTensorAttr

typedef AttrMap<QString, SymmetricTensor> mgx::QStringSymTensorAttr

Definition at line 907 of file Attributes.hpp.

QStringVec2ColorbAttr

typedef AttrMap<QString, Vec2Colorb> mgx::QStringVec2ColorbAttr

Definition at line 904 of file Attributes.hpp.

QStringVec3ColorbAttr

typedef AttrMap<QString, Vec3Colorb> mgx::QStringVec3ColorbAttr

Definition at line 905 of file Attributes.hpp.

QuaternionVec

typedef std::vector<Quaternion> mgx::QuaternionVec

Definition at line 19 of file MiscProcessAnimate.hpp.

Set

typedef std::set< vertex > mgx::Set

Definition at line 37 of file MeshProcessHeatMap.hpp.

SortResultVector

typedef std::vector<SortResultData> mgx::SortResultVector

Definition at line 71 of file DataAnalyzer.hpp.

SortResultVectorAll

typedef std::vector<SortResultVector> mgx::SortResultVectorAll

Definition at line 72 of file DataAnalyzer.hpp.

SymmetricTensor

typedef SymmetricTensor mgx::SymmetricTensor

Definition at line 45 of file Geometry.hpp.

tagDataMap

typedef std::map<int, FileDataVector> mgx::tagDataMap

Definition at line 77 of file DataAnalyzer.hpp.

tagTypeVector

typedef std::vector<Vec2i> mgx::tagTypeVector

Definition at line 76 of file DataAnalyzer.hpp.

Tri

typedef std::pair<VtxVtx, vertex> mgx::Tri

Definition at line 33 of file DivisionAnalysisUtils.hpp.

TriBoolAttr

typedef AttrMap<Triangle, bool> mgx::TriBoolAttr

Definition at line 889 of file Attributes.hpp.

TriColorbAttr

typedef AttrMap<Triangle, Colorb> mgx::TriColorbAttr

Definition at line 893 of file Attributes.hpp.

TriFloatAttr

typedef AttrMap<Triangle, float> mgx::TriFloatAttr

Definition at line 890 of file Attributes.hpp.

TriInt

typedef pair<Triangle, int> mgx::TriInt

Definition at line 40 of file DivisionAnalysisUtils.hpp.

TriIntAttr

typedef AttrMap<Triangle, int> mgx::TriIntAttr

Definition at line 888 of file Attributes.hpp.

TriMatrix3fAttr

typedef AttrMap<Triangle, Matrix3f> mgx::TriMatrix3fAttr

Definition at line 896 of file Attributes.hpp.

TriPoint2fAttr

typedef AttrMap<Triangle, Point2f> mgx::TriPoint2fAttr

Definition at line 891 of file Attributes.hpp.

TriPoint3fAttr

typedef AttrMap<Triangle, Point3f> mgx::TriPoint3fAttr

Definition at line 892 of file Attributes.hpp.

TriQStringAttr

typedef AttrMap<Triangle, QString> mgx::TriQStringAttr

Definition at line 898 of file Attributes.hpp.

TriSymTensorAttr

typedef AttrMap<Triangle, SymmetricTensor> mgx::TriSymTensorAttr

Definition at line 897 of file Attributes.hpp.

TriSymTensorMap

typedef std::unordered_map<Triangle, SymmetricTensor> mgx::TriSymTensorMap

Map a triangle to a symmetric tensor.

Definition at line 114 of file Triangle.hpp.

TriSymTensorPair

typedef std::pair<Triangle, SymmetricTensor> mgx::TriSymTensorPair

Element in TriSymTensorMap.

Definition at line 120 of file Triangle.hpp.

TriVec2ColorbAttr

typedef AttrMap<Triangle, Vec2Colorb> mgx::TriVec2ColorbAttr

Definition at line 894 of file Attributes.hpp.

TriVec3ColorbAttr

typedef AttrMap<Triangle, Vec3Colorb> mgx::TriVec3ColorbAttr

Definition at line 895 of file Attributes.hpp.

triVector

typedef std::vector<Triangle> mgx::triVector

Definition at line 23 of file GraphUtils.hpp.

ubyte

typedef unsigned char mgx::ubyte

This filee contains different useful geometry algorithms, like intersections, areas, ...

Definition at line 39 of file Geometry.hpp.

uchar

typedef unsigned char mgx::uchar

Definition at line 40 of file Geometry.hpp.

uint

typedef unsigned int mgx::uint

Definition at line 41 of file Geometry.hpp.

UIntSet

typedef std::set<uint> mgx::UIntSet

Used with vertex ids.

Definition at line 133 of file Types.hpp.

ulong

typedef unsigned long mgx::ulong

Definition at line 43 of file Geometry.hpp.

ushort

typedef unsigned short mgx::ushort

Simpler names for the various containers and iterators.

Definition at line 42 of file Geometry.hpp.

vec1

typedef Vector<1, GLfloat> mgx::vec1

Definition at line 36 of file Shader.hpp.

vec2

typedef Vector<2, GLfloat> mgx::vec2

Definition at line 37 of file Shader.hpp.

Vec2Colorb

typedef Vector<2, Colorb> mgx::Vec2Colorb

Definition at line 63 of file Attributes.hpp.

Vec2i

typedef Vector<2, int> mgx::Vec2i

Definition at line 75 of file DataAnalyzer.hpp.

vec3

typedef Vector<3, GLfloat> mgx::vec3

Definition at line 38 of file Shader.hpp.

Vec3Colorb

typedef Vector<3, Colorb> mgx::Vec3Colorb

Definition at line 64 of file Attributes.hpp.

vec4

typedef Vector<4, GLfloat> mgx::vec4

Definition at line 39 of file Shader.hpp.

vertex

typedef vvGraph::vertex_t mgx::vertex

Type of a vertex.

Definition at line 50 of file Misc.hpp.

vertex_identity_t

typedef intptr_t mgx::vertex_identity_t

Type of the identifier of a vertex.

Definition at line 40 of file Vertex.hpp.

VertexPr

typedef std::pair< vertex, vertex > mgx::VertexPr

Definition at line 36 of file MeshProcessHeatMap.hpp.

VertexPrSet

typedef std::pair<VertexPr, Set> mgx::VertexPrSet

Definition at line 24 of file MeshProcessMeasures.hpp.

VIdSet

typedef std::set<intptr_t> mgx::VIdSet

Set of vertex ids.

Definition at line 72 of file Types.hpp.

VtxBoolAttr

typedef AttrMap<vertex, bool> mgx::VtxBoolAttr

Definition at line 841 of file Attributes.hpp.

VtxBoolMap

typedef std::unordered_map<vertex, bool> mgx::VtxBoolMap

Map of vertex to bool.

Definition at line 156 of file Types.hpp.

VtxCellMap

typedef std::unordered_map<vertex, cell> mgx::VtxCellMap

Map of vertex to cell.

Definition at line 152 of file Types.hpp.

VtxColorbAttr

typedef AttrMap<vertex, Colorb> mgx::VtxColorbAttr

Definition at line 845 of file Attributes.hpp.

VtxDouble

typedef std::pair<cell, double> mgx::VtxDouble

Definition at line 19 of file DivisionAnalysisUtils.hpp.

VtxFloatAttr

typedef AttrMap<vertex, float> mgx::VtxFloatAttr

Definition at line 842 of file Attributes.hpp.

VtxFloatMap

typedef std::unordered_map<vertex, float> mgx::VtxFloatMap

Map of vertex to float.

Definition at line 158 of file Types.hpp.

VtxInt

typedef std::pair<vertex, int> mgx::VtxInt

Definition at line 35 of file DivisionAnalysisUtils.hpp.

VtxIntAttr

typedef AttrMap<vertex, int> mgx::VtxIntAttr

Definition at line 840 of file Attributes.hpp.

VtxIntMap

typedef std::unordered_map<vertex, int> mgx::VtxIntMap

Map of vertex to int.

Definition at line 154 of file Types.hpp.

VtxMatrix3fAttr

typedef AttrMap<vertex, Matrix3f> mgx::VtxMatrix3fAttr

Definition at line 848 of file Attributes.hpp.

VtxMatrix3fMap

typedef std::unordered_map<vertex, Matrix3f> mgx::VtxMatrix3fMap

Map of vertex to Matrix3f.

Definition at line 168 of file Types.hpp.

VtxPoint2dMap

typedef std::unordered_map<vertex, Point2d> mgx::VtxPoint2dMap

Map of vertex to Point2d.

Definition at line 162 of file Types.hpp.

VtxPoint2fAttr

typedef AttrMap<vertex, Point2f> mgx::VtxPoint2fAttr

Definition at line 843 of file Attributes.hpp.

VtxPoint2fMap

typedef std::unordered_map<vertex, Point2f> mgx::VtxPoint2fMap

Map of vertex to Point2f.

Definition at line 160 of file Types.hpp.

VtxPoint3dMap

typedef std::unordered_map<vertex, Point3d> mgx::VtxPoint3dMap

Map of vertex to Point3d.

Definition at line 166 of file Types.hpp.

VtxPoint3fAttr

typedef AttrMap<vertex, Point3f> mgx::VtxPoint3fAttr

Definition at line 844 of file Attributes.hpp.

VtxPoint3fMap

typedef std::unordered_map<vertex, Point3f> mgx::VtxPoint3fMap

Map of vertex to Point3f.

Definition at line 164 of file Types.hpp.

VtxQStringAttr

typedef AttrMap<vertex, QString> mgx::VtxQStringAttr

Definition at line 850 of file Attributes.hpp.

VtxSet

typedef std::set<vertex> mgx::VtxSet

Set of vertices.

Definition at line 131 of file Types.hpp.

VtxSymTensorAttr

typedef AttrMap<vertex, SymmetricTensor> mgx::VtxSymTensorAttr

Definition at line 849 of file Attributes.hpp.

VtxVec

typedef std::vector<vertex> mgx::VtxVec

Vector of vertices.

Definition at line 135 of file Types.hpp.

VtxVec2ColorbAttr

typedef AttrMap<vertex, Vec2Colorb> mgx::VtxVec2ColorbAttr

Definition at line 846 of file Attributes.hpp.

VtxVec3ColorbAttr

typedef AttrMap<vertex, Vec3Colorb> mgx::VtxVec3ColorbAttr

Definition at line 847 of file Attributes.hpp.

VtxVtx

typedef std::pair< vertex, vertex > mgx::VtxVtx

Definition at line 22 of file DivisionAnalysis.hpp.

VtxVtxMap

typedef std::unordered_map<vertex, vertex> mgx::VtxVtxMap

Map of vertex to vertex.

Definition at line 149 of file Types.hpp.

Vtxvtxp

typedef std::pair<VtxVtx, vertex> mgx::Vtxvtxp

Definition at line 34 of file DivisionAnalysisUtils.hpp.

VtxVtxPair

typedef std::pair<vertex, vertex> mgx::VtxVtxPair

Definition at line 150 of file Types.hpp.

vvGraph

typedef VVGraph< mgx::VertexData, mgx::EdgeData > mgx::vvGraph

Simpler names for the various containers and iterators related to vertices and VV.

Type of the VV graph holding the actual mesh

Definition at line 47 of file Misc.hpp.

VVGraphVec

typedef std::vector<vvGraph> mgx::VVGraphVec

Vector of vvGraphs.

Definition at line 137 of file Types.hpp.

vvGraphVec

typedef std::vector<vvGraph *> mgx::vvGraphVec

Vector of vvGraphs.

Definition at line 141 of file Types.hpp.

wall

typedef cellGraph::edge_t mgx::wall

Type of an edge.

Definition at line 124 of file Types.hpp.

WallBoolAttr

typedef AttrMap<wall, bool> mgx::WallBoolAttr

Definition at line 877 of file Attributes.hpp.

WallColorbAttr

typedef AttrMap<wall, Colorb> mgx::WallColorbAttr

Definition at line 881 of file Attributes.hpp.

WallFloatAttr

typedef AttrMap<wall, float> mgx::WallFloatAttr

Definition at line 878 of file Attributes.hpp.

WallIntAttr

typedef AttrMap<wall, int> mgx::WallIntAttr

Definition at line 876 of file Attributes.hpp.

WallMatrix3fAttr

typedef AttrMap<wall, Matrix3f> mgx::WallMatrix3fAttr

Definition at line 884 of file Attributes.hpp.

WallPoint2fAttr

typedef AttrMap<wall, Point2f> mgx::WallPoint2fAttr

Definition at line 879 of file Attributes.hpp.

WallPoint3fAttr

typedef AttrMap<wall, Point3f> mgx::WallPoint3fAttr

Definition at line 880 of file Attributes.hpp.

WallQStringAttr

typedef AttrMap<wall, QString> mgx::WallQStringAttr

Definition at line 886 of file Attributes.hpp.

WallSymTensorAttr

typedef AttrMap<wall, SymmetricTensor> mgx::WallSymTensorAttr

Definition at line 885 of file Attributes.hpp.

WallVec2ColorbAttr

typedef AttrMap<wall, Vec2Colorb> mgx::WallVec2ColorbAttr

Definition at line 882 of file Attributes.hpp.

WallVec3ColorbAttr

typedef AttrMap<wall, Vec3Colorb> mgx::WallVec3ColorbAttr

Definition at line 883 of file Attributes.hpp.

Enumeration Type Documentation

DimEnum

enum mgx::DimEnum

Enumerator
X
Y
Z
XY
YZ
XZ
XYZ

Definition at line 71 of file Cuda.hpp.

SolvingMethod

enum mgx::SolvingMethod

Enumerator
Euler
BackwardEuler

Definition at line 32 of file Solver.hpp.

UNIFORM_TYPE

enum mgx::UNIFORM_TYPE

Enumerator
UNIFORM_INT
UNIFORM_INT2
UNIFORM_INT3
UNIFORM_INT4
UNIFORM_FLOAT
UNIFORM_FLOAT2
UNIFORM_FLOAT3
UNIFORM_FLOAT4
UNIFORM_MATRIX2
UNIFORM_MATRIX3
UNIFORM_MATRIX4

Definition at line 44 of file Shader.hpp.

Function Documentation

__assert_fail()

void mgx::__assert_fail	(	const QString &	assertion,
		const char *	file,
		unsigned int	line,
		const char *	function
	)

absoluteFilePath()

mgx_EXPORT QString mgx::absoluteFilePath

(

QString

filename

)

Return the absolute path to a file.

addCenterDisplacementTestCut()

void mgx::addCenterDisplacementTestCut	(	int	centerVarSteps,
		double	centerVarStepSize,
		Point3d	cellCenter,
		Point3d	perpendicularPlane,
		std::set< Point3d >	perpPlaneNormals2,
		std::unordered_map< Point3d, Point3d > &	wallCenter,
		std::unordered_map< Point3d, std::vector< Point3d > >	wallPoints,
		std::vector< P3dDouble > &	samplingDirections
	)

addGPU()

template<typename T >

int mgx::addGPU	(	T *	v1,
		T *	v2,
		T *	r
	)

Definition at line 288 of file DistMatrixCuda.hpp.

addToDiagGPU()

template<typename T >

int mgx::addToDiagGPU	(	typename T::value_type::value_type	a,
		T *	r
	)

Definition at line 274 of file DistMatrixCuda.hpp.

allocGPU() [1/2]

template<typename T >

int mgx_EXPORT mgx::allocGPU	(	T **	vec,
		size_t	n
	)

Definition at line 31 of file DistObjectCuda.hpp.

allocGPU() [2/2]

template<typename T >

int mgx::allocGPU	(	T **	vec,
		size_t	n
	)

Definition at line 31 of file DistObjectCuda.hpp.

angleVectors()

mgx_EXPORT double mgx::angleVectors	(	Point3d	v1,
		Point3d	v2,
		bool	directed = false
	)

applyKernelGPU()

cuda_EXPORT int mgx::applyKernelGPU	(	const Point3i &	imgSize,
		const HVecF &	kernelX,
		const HVecF &	kernelY,
		const HVecF &	kernelZ,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

assembleCellFromWalls()

void mgx::assembleCellFromWalls	(	vvGraph &	S,
		std::vector< vertex >	vtxs,
		std::vector< Point3i >	tris,
		std::set< vertex > &	borderVtxs,
		double	mergingThreshold,
		int	labelCounter,
		bool	orientCheck
	)

aStar()

mgx_EXPORT std::set<int> mgx::aStar	(	std::vector< int > &	uniqueLabels,
		std::map< int, Point3d > &	cellCentroids,
		std::map< IntInt, double > &	wallAreas,
		int	label1,
		int	label2,
		double	wallThreshold,
		bool	equalWeights
	)

atomicAddMGX()

double mgx::atomicAddMGX ( double *  address, double  val  )

inline

Definition at line 98 of file Cuda.hpp.

averageGPU()

cuda_EXPORT int mgx::averageGPU	(	const Point3i &	imgSize,
		const Point3i &	radius,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

avgCellSizeMGX3D()

double mgx::avgCellSizeMGX3D

(

const cell &

c

)

returns an approximation of the 3D cell size (the average of the distance of every vertex to the cell center)

Parameters

c

cell

BiCG()

template<typename DMatrixT , typename DVectorT >

int mgx::BiCG	(	DMatrixT &	A,
		DMatrixT &	AT,
		DVectorT &	x,
		DVectorT &	b,
		double	tolerance,
		uint	maxiter = 500,
		double	maxnorm = 1e100,
		int	info = 0
	)

Definition at line 128 of file KrylovMethods.hpp.

BiCGStab()

template<typename DMatrixT , typename DVectorT >

int mgx::BiCGStab	(	DMatrixT &	A,
		DVectorT &	x,
		DVectorT &	b,
		double	tolerance,
		uint	maxiter = 500,
		double	maxnorm = 1e100,
		int	info = 0
	)

Definition at line 21 of file KrylovMethods.hpp.

BiCGStabPreCond()

template<typename DMatrixT , typename DVectorT >

int mgx::BiCGStabPreCond	(	DMatrixT &	A,
		DVectorT &	x,
		DVectorT &	b,
		double	tolerance,
		uint	maxiter = 500,
		double	maxnorm = 1e100,
		int	info = 0
	)

Definition at line 313 of file KrylovMethods.hpp.

calcBetweenness() [1/3]

mgx_EXPORT void mgx::calcBetweenness	(	cellGraph &	C,
		std::map< cell, double > &	cellBetweenessMap
	)

calcBetweenness() [2/3]

mgx_EXPORT bool mgx::calcBetweenness	(	cellGraph &	C,
		std::map< IntInt, double > &	weights,
		std::map< cell, double > &	cellBetweenessMap
	)

calcBetweenness() [3/3]

mgx_EXPORT bool mgx::calcBetweenness	(	std::map< IntInt, double > &	neighborhoodGraph,
		std::map< int, double > &	cellBetweenessMap
	)

calcCellGraphJoinedCells()

void mgx::calcCellGraphJoinedCells	(	cellGraph &	C,
		const cell &	c1,
		const cell &	c2
	)

add the neighbors of c2 to the cell graph of c1

Parameters

C	cellGraph the cell Graph structure
c1	cell target cell
c2	cell source cell

calcCircumferential()

double mgx::calcCircumferential	(	Point3d	dirRadRef,
		Point3d	dirLongRef,
		Point3d	cellCenter,
		Point3d	cellOnLong
	)

calcEigenVecsValues()

void mgx::calcEigenVecsValues ( Matrix3d &  M, Point3d &  p1, Point3d &  p2, Point3d &  p3, Point3d &  ev  )

inline

Definition at line 27 of file SymmetricTensor.hpp.

calcJoinedCell()

void mgx::calcJoinedCell	(	const cell &	c1,
		const cell &	c2,
		vvGraph &	result,
		bool	simple
	)

returns the area of a polygon

Parameters

calcNearestPointOnBezierGrid()

mgx_EXPORT Point3d mgx::calcNearestPointOnBezierGrid	(	const Point3d &	targetPoint,
		std::vector< std::vector< Point3d > > &	bezier,
		Point2i &	bezIdx
	)

calculates the nearest point of a tragetPoint on a bezier grid (bezier)

Parameters

targetPoint	Point3d input: the target point
bezier	std::vector<std::vector<Point3d> > input: the Bezier Grid array
bezIdx	int output: index of nearest point on the line

calcNearestPointOnBezierLine() [1/3]

mgx_EXPORT Point3d mgx::calcNearestPointOnBezierLine	(	const Point3d &	targetPoint,
		std::map< int, Point3d > &	bMap
	)

calcNearestPointOnBezierLine() [2/3]

mgx_EXPORT Point3d mgx::calcNearestPointOnBezierLine	(	const Point3d &	targetPoint,
		std::map< int, Point3d > &	bMap,
		int &	bezIdx,
		double &	bezWeight
	)

calcNearestPointOnBezierLine() [3/3]

mgx_EXPORT Point3d mgx::calcNearestPointOnBezierLine	(	const Point3d &	targetPoint,
		std::vector< Point3d > &	bezierVec,
		int &	bezIdx,
		double &	bezWeight
	)

calculates the nearest point of a tragetPoint on a bezier line (bMap) as the bezier is discretized, it is approximated linearly between the nearest point and the closer neighbor point

Parameters

targetPoint	Point3d input: the target point
bMap	std::map<int, Point3d> input: the Bezier line
bezIdx	int output: index of nearest point on the line
bezWeight	double output: weight of the point

calcNormal()

mgx_EXPORT bool mgx::calcNormal	(	const vvGraph &	S,
		const vertex &	v,
		Point3d &	nrml
	)

Set the normal in a single vertex.

Parameters

S	vvGraph to set normal on
v	vertex to set
nrml	calculated normal

calcProjectedGrowthTensor()

mgx_EXPORT Matrix3d mgx::calcProjectedGrowthTensor	(	Matrix3d	tensor,
		Point3d	planeNrml
	)

projectPointOnPlane

calcRandWalkBetweenness() [1/3]

void mgx::calcRandWalkBetweenness	(	cellGraph &	C,
		std::map< IntInt, double > &	weights,
		std::map< cell, double > &	cellBetweenessMap,
		bool	useGPU,
		bool	doRevCuthill
	)

calcRandWalkBetweenness() [2/3]

void mgx::calcRandWalkBetweenness	(	std::map< IntInt, double > &	neighborhoodGraph,
		std::map< int, double > &	labelBetweenessMap,
		bool	useGPU
	)

calcRandWalkBetweenness() [3/3]

void mgx::calcRandWalkBetweenness	(	std::map< IntInt, double > &	neighborhoodWeights,
		std::map< int, int > &	labelPosMap,
		std::vector< int > &	orderedLabels,
		std::map< int, double > &	cellBetweenessMap,
		bool	useGPU
	)

calcRatio()

double mgx::calcRatio	(	double	value1,
		double	value2
	)

return the ratio ( = bigger value divided by smaller value)

Parameters

value1	double
value2	double

calcRGB()

mgx_EXPORT QRgb mgx::calcRGB	(	double	maxValue,
		double	currentValue
	)

calcRotMatrix()

mgx_EXPORT Matrix3d mgx::calcRotMatrix	(	Point3d	nrmlStart,
		Point3d	nrmlEnd,
		Point3d	rot_axis = Point3d(0, 0, 0)
	)

calcRotMatrix

calculates the rotation matrix given an initial plane normal and a final plane normal Point3d nrmlStart : initial plane normal Point3d nrmlEnd : final plane normal

calcSignalBounds()

Point2f mgx::calcSignalBounds

(

const vvGraph &

S

)

calcTriArea()

double mgx::calcTriArea

(

std::set< Triangle > &

tris

)

calcVolume()

double mgx::calcVolume

(

vector< Triangle >

tris

)

cartesianToOrganCoordsLong()

double mgx::cartesianToOrganCoordsLong	(	Point3d	cartesianCoords,
		std::map< int, Point3d > &	bMap,
		Point3d &	closestPoint
	)

cellTriNeighbors()

void mgx::cellTriNeighbors	(	cellGraph &	C,
		const cell &	c,
		std::map< Triangle, int > &	trisNeighbMap
	)

CG()

template<typename DMatrixT , typename DVectorT >

int mgx::CG	(	DMatrixT &	A,
		DVectorT &	x,
		DVectorT &	b,
		double	tolerance,
		uint	maxiter = 500,
		double	maxnorm = 1e100,
		int	info = 0
	)

Definition at line 200 of file KrylovMethods.hpp.

CGPreCond()

template<typename DMatrixT , typename DVectorT >

int mgx::CGPreCond	(	DMatrixT &	A,
		DVectorT &	x,
		DVectorT &	b,
		double	tolerance,
		uint	maxiter = 500,
		double	maxnorm = 1e100,
		int	info = 0
	)

Definition at line 253 of file KrylovMethods.hpp.

checkBorderTris()

mgx_EXPORT bool mgx::checkBorderTris	(	const vvGraph &	S,
		bool	select = true
	)

Check for unlabeled vertices, border triangles and islands of label in preparation to make a cell mesh.

Parameters

S	Graph to check
select	Select affected vertices

checkBounds()

int mgx::checkBounds ( const Point3i &  imgSize, const Point3i &  base, const Point3i &  size  )

inline

Definition at line 541 of file ImageCuda.hpp.

checkCudaError()

cuda_EXPORT int mgx::checkCudaError

(

const std::string &

msg

)

clamp()

template<class T >

T mgx::clamp	(	const T &	val,
		const T &	min,
		const T &	max
	)

A function to clamp a value to a range.

Parameters

val	The start value.
min	The minimum value of the range.
max	The maximum value of the range.

If min is more than max, the function returns max.

Definition at line 33 of file Clamp.hpp.

clipPoint()

__device__ __host__ bool mgx::clipPoint ( const Point3f &  wp, const Point3u &  clipDo, const Point4f *  pn  )

inline

Definition at line 146 of file ImageCuda.hpp.

clipStackGPU()

cuda_EXPORT int mgx::clipStackGPU	(	const Point3i &	imgSize,
		const Point3f &	step,
		const Point3f &	shift,
		const Point3u &	clipDo,
		HVec4F &	pn,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

cofactor()

template<size_t nRows, typename T >

CU_HOST_DEVICE T mgx::cofactor ( const Matrix< nRows, nRows, T > &  mat, size_t  i, size_t  j  )

related

Definition at line 992 of file Matrix.hpp.

colorGradGPU()

cuda_EXPORT int mgx::colorGradGPU	(	const Point3i &	imgSize,
		float	div,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

compModes()

QStringList mgx::compModes

(

)

Get the list of composition modes.

composite() [1/2]

Colorb mgx::composite ( const Colorb &  dest, const Colorb &  source, comp::CompositeMode  mode = comp::OVER  )

inline

Compose a source with dest.

Definition at line 356 of file Color.hpp.

composite() [2/2]

Colorf mgx::composite	(	const Colorf &	dest,
		const Colorf &	source,
		comp::CompositeMode	mode = comp::OVER
	)

Compose a source with dest.

convertFromQColor() [1/5]

mgx_EXPORT void mgx::convertFromQColor	(	Color< double > &	c,
		const QColor &	col
	)

convertFromQColor() [2/5]

mgx_EXPORT void mgx::convertFromQColor	(	Color< float > &	c,
		const QColor &	col
	)

convertFromQColor() [3/5]

mgx_EXPORT void mgx::convertFromQColor	(	Color< long double > &	c,
		const QColor &	col
	)

convertFromQColor() [4/5]

mgx_EXPORT void mgx::convertFromQColor	(	Color< unsigned char > &	c,
		const QColor &	col
	)

convertFromQColor() [5/5]

mgx_EXPORT void mgx::convertFromQColor	(	Color< unsigned short > &	c,
		const QColor &	col
	)

convertHSVtoRGB() [1/2]

template<class T >

Color<T> mgx::convertHSVtoRGB

(

const Color< T > &

hsv

)

Return a color based on HSV values.

Definition at line 224 of file Color.hpp.

convertHSVtoRGB() [2/2]

template<class T >

Color<T> mgx::convertHSVtoRGB	(	T	h,
		T	s,
		T	v
	)

Return a color based on HSV values.

Definition at line 166 of file Color.hpp.

convertRGBtoHSV()

template<class T >

Color<T> mgx::convertRGBtoHSV

(

const Color< T > &

rgb

)

Return a color based on HSV values.

Definition at line 285 of file Color.hpp.

convertToQColor() [1/5]

mgx_EXPORT QColor mgx::convertToQColor

(

const Color< double > &

c

)

convertToQColor() [2/5]

mgx_EXPORT QColor mgx::convertToQColor

(

const Color< float > &

c

)

convertToQColor() [3/5]

mgx_EXPORT QColor mgx::convertToQColor

(

const Color< long double > &

c

)

convertToQColor() [4/5]

mgx_EXPORT QColor mgx::convertToQColor

(

const Color< unsigned char > &

c

)

convertToQColor() [5/5]

mgx_EXPORT QColor mgx::convertToQColor

(

const Color< unsigned short > &

c

)

copy_symmetric()

template<typename T >

void mgx::copy_symmetric	(	T &	e2,
		const T &	e1
	)

Default copy of the arc uses the = operator.

Overload this function for your own type to change this behavior.

Definition at line 247 of file Edge.hpp.

copyCellGraph()

void mgx::copyCellGraph	(	CellTissue &	orig,
		CellTissue &	copy
	)

copies the cell graph, used for simulating cell division (without altering the original)

Parameters

orig	CellTissue source tissue
copy	CellTissue target tissue

copyGPU() [1/2]

template<typename T1 , typename T2 >

int mgx_EXPORT mgx::copyGPU	(	T1 *	src,
		T2 *	dst
	)

Definition at line 21 of file DistObjectCuda.hpp.

copyGPU() [2/2]

template<typename T1 , typename T2 >

int mgx::copyGPU	(	T1 *	src,
		T2 *	dst
	)

Definition at line 21 of file DistObjectCuda.hpp.

correctNormals()

mgx_EXPORT void mgx::correctNormals

(

vvGraph &

S

)

Correct MGXC normals (happens for non-star shaped cells)

Parameters

S	vvGraph to set normal on

createPlyDataFromAttr()

void mgx::createPlyDataFromAttr	(	Mesh *	m,
		QStringList	attrMapsToBeSaved,
		std::vector< PlyCellData > &	cellVec,
		std::vector< PlyWallData > &	wallVec
	)

currentDir()

mgx_EXPORT QDir mgx::currentDir

(

)

Get the current path as a directory.

currentPath()

mgx_EXPORT QString mgx::currentPath

(

)

Get the current path.

customDirectionTensor()

mgxBase_EXPORT SymmetricTensor mgx::customDirectionTensor	(	SymmetricTensor	origTensor,
		Point3f	customX,
		Point3f	customY,
		bool	shearB
	)

cuthillMckeeOrdering() [1/2]

mgx_EXPORT std::vector<cell> mgx::cuthillMckeeOrdering	(	cellGraph &	C,
		std::map< cell, int > &	cellOrder
	)

cuthillMckeeOrdering() [2/2]

mgx_EXPORT std::vector<cell> mgx::cuthillMckeeOrdering	(	cellGraph &	C,
		std::map< cell, int > &	cellOrder,
		const cell &	minCell
	)

deleteCells()

mgx_EXPORT bool mgx::deleteCells	(	vvGraph &	S,
		const VtxVec &	V
	)

Check for unlabeled vertices, border triangles and islands of label in preparation to make a cell mesh.

Parameters

S	Graph to check
V	Vector of cell centers to delete

demangle()

mgx_EXPORT std::string mgx::demangle

(

std::string

s

)

Demangle all the words in the string.

Returns

The string with all symbols demangled.

det() [1/4]

template<typename T >

CU_HOST_DEVICE T mgx::det ( const Matrix< 1, 1, T > &  mat )

related

Definition at line 946 of file Matrix.hpp.

det() [2/4]

template<typename T >

CU_HOST_DEVICE T mgx::det ( const Matrix< 2, 2, T > &  mat )

related

Definition at line 950 of file Matrix.hpp.

det() [3/4]

template<typename T >

CU_HOST_DEVICE T mgx::det ( const Matrix< 3, 3, T > &  mat )

related

Definition at line 955 of file Matrix.hpp.

det() [4/4]

template<size_t nRows, typename T >

CU_HOST_DEVICE T mgx::det ( const Matrix< nRows, nRows, T > &  mat )

related

Definition at line 961 of file Matrix.hpp.

devP() [1/2]

template<typename T >

T* mgx::devP

(

thrust::device_vector< T > &

DVec

)

Definition at line 81 of file Cuda.hpp.

devP() [2/2]

template<typename T >

T* mgx::devP

(

thrust::device_vector< T > *

DVec

)

Definition at line 82 of file Cuda.hpp.

differentialOfBezierGrid()

void mgx::differentialOfBezierGrid	(	std::vector< std::vector< Point3d > > &	bezierGrid,
		Point2i &	p,
		Point3d &	diffU,
		Point3d &	diffV
	)

dijkstra() [1/3]

mgx_EXPORT std::map<int, double> mgx::dijkstra	(	std::set< int > &	allCellLabels,
		std::map< IntInt, double > &	wallAreas,
		std::map< int, double > &	initialCells,
		bool	equalWeights,
		double	cutOffDistance,
		double	wallThreshold
	)

dijkstra() [2/3]

mgx_EXPORT std::map<int, double> mgx::dijkstra	(	std::set< int > &	allCellLabels,
		std::map< IntInt, double > &	wallAreas,
		std::set< int > &	selectedCells,
		bool	equalWeights,
		double	cutOffDistance,
		double	wallThreshold
	)

dijkstra() [3/3]

mgx_EXPORT std::map<int, double> mgx::dijkstra	(	vvGraph &	S,
		std::map< IntInt, double > &	wallAreas,
		std::set< int > &	selectedCells,
		bool	equalWeights,
		double	cutOffDistance,
		double	wallThreshold
	)

dilateGPU()

cuda_EXPORT int mgx::dilateGPU	(	const Point3i &	imgSize,
		const Point3i &	radius,
		bool	roundNhbd,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

discretizeBezierLineRef()

void mgx::discretizeBezierLineRef	(	CuttingSurface *	cutSurf,
		double	vPos,
		double	vRefPos,
		Matrix4d	rotMat,
		int	bezMapSize,
		std::map< int, Point3d > &	bMap,
		std::map< int, Point3d > &	diffbMap,
		std::map< int, Point3d > &	refbMap
	)

distLinePoint()

template<typename T >

CU_HOST_DEVICE T mgx::distLinePoint	(	const Point3(T) &	v1,
		const Point3(T) &	_v2,
		const Point3(T) &	_p,
		bool	segment
	)

Definition at line 385 of file Geometry.hpp.

divisionPlaneArea()

double mgx::divisionPlaneArea	(	Point3d	cellCenter,
		const std::vector< Point3d > &	v
	)

returns the area of a polygon (=division plane)

Parameters

cellCenter	Point3d the center of the cell (of the polygon)
v	std::vector<Point3d> corner points of the polygon (=division plane)

divisionPlaneAreaMulti()

double mgx::divisionPlaneAreaMulti	(	Point3d	cellCenter,
		const std::vector< std::vector< Point3d > > &	vMulti
	)

returns the summed area of multiple polygons (=division planes)

Parameters

cellCenter	Point3d the center of the cell (of the polygon)
vMulti	std::vector<std::vector<Point3d> > vector of corner points of the polygons (=division planes)

docDir()

mgx_EXPORT QDir mgx::docDir

(

)

Returns the documentation directory.

drawCircle()

mgx_EXPORT void mgx::drawCircle	(	QImage &	image,
		int	x,
		int	y,
		int	size,
		QRgb	color
	)

drawCross()

mgx_EXPORT void mgx::drawCross	(	QImage &	image,
		int	x,
		int	y,
		int	size,
		int	crossSize,
		QRgb	color
	)

drawPlane()

void mgx::drawPlane	(	const Process &	process,
		Mesh *	m,
		DivisionPlane &	vtxTris,
		Point3d	scalingNormal = Point3d(0, 0, 0),
		double	scalingFac = 1
	)

edgeDetectGPU()

cuda_EXPORT int mgx::edgeDetectGPU	(	const Point3i &	imgSize,
		ushort	lowthresh,
		ushort	highthresh,
		float	mult,
		ushort	fillval,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

erodeGPU()

cuda_EXPORT int mgx::erodeGPU	(	const Point3i &	imgSize,
		const Point3i &	radius,
		bool	byLabel,
		bool	roundNhbd,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

errMsg()

int mgx::errMsg

(

const std::string &

s

)

estimateCellLength()

mgx_EXPORT double mgx::estimateCellLength	(	int	currentLabel,
		Point3d	coordCellCentroid,
		Point3d &	dirVec,
		triVector &	cellTriangles
	)

estimates the size of the cell in a given direction by shooting two rays in a specified direction and its opposite

returns the cell size

estimateVolumeDaughterCells()

void mgx::estimateVolumeDaughterCells	(	std::vector< Triangle > &	trisLeft,
		std::vector< Triangle > &	trisRight,
		std::vector< Triangle > &	trisSplit
	)

estimateVolumeOpenBody()

double mgx::estimateVolumeOpenBody	(	std::vector< Triangle >	tris,
		set< vertex > &	exposedVtxs
	)

extractVersion()

mgx_EXPORT QList<int> mgx::extractVersion

(

QIODevice &

file

)

fillGPU()

template<typename T >

int mgx::fillGPU	(	typename T::value_type::value_type	a,
		T *	r
	)

Definition at line 324 of file DistMatrixCuda.hpp.

fillTreeWidgetWithAttrMaps()

void mgx::fillTreeWidgetWithAttrMaps	(	Mesh *	m,
		QTreeWidget *	tree,
		QStringList *	selected = 0
	)

filterProcesses()

void mgx::filterProcesses	(	QTreeWidget *	tree,
		const QString &	filter_text
	)

Show only processes whose name match the regular expression.

Parameters

tree	Tree of processes to filter
filter	Regular expression to filter with

findAllLabels()

mgx_EXPORT std::vector<int> mgx::findAllLabels

(

const vvGraph &

S

)

return ALL labels of a vvGraph originally in CellAtlas, now also used in other AddOns

Parameters

S

vvGraph

findAllLabelsSet()

mgx_EXPORT std::set<int> mgx::findAllLabelsSet

(

const vvGraph &

S

)

findAllSelectedLabels()

mgx_EXPORT std::set<int> mgx::findAllSelectedLabels

(

const vvGraph &

S

)

return ALL labels of selected vertices of a vvGraph originally in CellAtlas, now also used in other AddOns

Parameters

S

vvGraph

findBorderVerticesOfCell()

mgx_EXPORT void mgx::findBorderVerticesOfCell	(	vvGraph &	S,
		int	cellLabel,
		std::set< vertex > &	verticesCell,
		std::vector< vertex > &	borderVerticesOrdered
	)

findBorderVerticesOfCellsCombined()

mgx_EXPORT void mgx::findBorderVerticesOfCellsCombined	(	vvGraph &	S,
		std::set< int >	cellLabels,
		std::set< vertex > &	verticesCells,
		std::vector< vertex > &	borderVerticesOrdered
	)

findCell()

bool mgx::findCell	(	cellGraph &	C,
		cell &	searchedCell,
		int	label,
		int &	maxLabel
	)

returns whether a cell with the specified label exists, also provides the cell and the max Label of all cells

Parameters

C	cellGraph the cell Graph structure
searchedCell	cell for the output of the cell (if it exists)
label	int input label of cell to be found
maxLabel	int maximum label number of all cells

findCellTris()

std::vector<Triangle> mgx::findCellTris	(	vvGraph &	S,
		int	cellLabel
	)

findIntersectPoint()

mgx_EXPORT bool mgx::findIntersectPoint	(	Point3d	coordCellCentroid,
		Point3d &	dirVec,
		std::vector< Triangle > &	cellTriangles,
		int &	stopCounter,
		Point3d &	intersectP
	)

shoots rays from the cell centroid along a direction and checks if it hits any of the cell triangles too avoid shooting through the edge between triangles the centroid point is varied slightly if nothing is hit

returns true if a triangle got hit and writes the intersection point

findMinMax()

void mgx::findMinMax	(	std::map< int, double > &	map,
		double &	min,
		double &	max
	)

findNeighborsLabel()

std::set<int> mgxBase_EXPORT mgx::findNeighborsLabel	(	Store *	store,
		Point3i	imgSize,
		Point3i	p,
		int	radius = 1
	)

findNeighbTris()

void mgx::findNeighbTris	(	cellGraph &	C,
		const cell &	c,
		std::map< cell, std::vector< Triangle > > &	neighbTris
	)

findPolygonPlane()

mgx_EXPORT bool mgx::findPolygonPlane	(	std::vector< Point3d > &	pointsPolygon,
		Point3d &	planePos,
		Point3d &	planeNrml
	)

findPolygonPlane

gives a fitted plane of a vector of points (the corner points of a polygon), calculates the fit using a PCA std::vector<Point3d> &pointsPolygon : the input point vector Point3d planePos : position of the plane Point3d planeNrml : normal of the plane

findSelectedLabel()

int mgx::findSelectedLabel

(

const vvGraph &

S

)

find ONE selected vertex in a vvGraph and return its label return 0 if nothing is selected

Parameters

S

vvGraph

findTwoSelectedLabels()

bool mgx::findTwoSelectedLabels	(	const vvGraph &	S,
		int &	label1,
		int &	label2
	)

find selected vertices in a vvGraph and return their TWO (different) labels return false if less than two different labels are selected

Parameters

S	vvGraph
label1	int first label to return
label2	int second label to return

fixBorderTris()

mgx_EXPORT int mgx::fixBorderTris

(

vvGraph &

S

)

Check for border triangles with all labels -1 and merge their vertices together.

Parameters

S	Graph to check

flipImage()

template<typename T >

void mgx::flipImage	(	DimEnum	dim,
		Point3i	imgSize,
		Point3i &	flipImgSize,
		const T &	src,
		T &	dst
	)

Definition at line 487 of file ImageCuda.hpp.

flipTri()

Triangle mgx::flipTri ( const Triangle &  t )

inline

Definition at line 111 of file Triangle.hpp.

freeMem()

cuda_EXPORT void mgx::freeMem

(

)

fromQString()

template<size_t dim, typename T >

bool mgx::fromQString	(	Vector< dim, T > &	p,
		const QString &	s,
		QString	sep = " "
	)

Convert a QString to a Point.

Parameters

s	String to convert

Definition at line 53 of file ProcessUtils.hpp.

gauss1D()

double mgx::gauss1D	(	double	x,
		double	muX,
		double	sigmaX
	)

returns the value of a 1D gaussian function

Parameters

x	double input value
muX	double mean value
sigmaX	double standard deviation value

gauss2D()

mgx_EXPORT double mgx::gauss2D	(	double	x,
		double	y,
		double	muX,
		double	muY,
		double	sigmaX,
		double	sigmaY
	)

returns the value of a 2D gaussian function

Parameters

x	double input value x dimension
y	double input value y dimension
muX	double mean value x dim
muY	double mean value y dim
sigmaX	double standard deviation value x dim
sigmaY	double standard deviation value y dim

gaussianBlurGPU()

cuda_EXPORT int mgx::gaussianBlurGPU	(	const Point3i &	imgSize,
		const Point3f &	imgStep,
		const Point3f &	sigma,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

gaussRan() [1/2]

template<size_t dim>

Vector<dim, double> mgx::gaussRan	(	const Vector< dim, double > &	mean,
		const Vector< dim, double > &	sigma
	)

Generate a random vector with gaussian distribution.

Parameters

mean	Vector with mean of the gaussian distribution for each dimension
sigma	Vector with standard deviation of the gaussian distribution for each dimension

Definition at line 91 of file Random.hpp.

gaussRan() [2/2]

mgx_EXPORT double mgx::gaussRan	(	double	mean,
		double	sigma
	)

Generate a random number with gaussian distribution.

Parameters

mean	Mean of the gaussian distribution
sigma	Standard deviation of the gaussian distribution

generateLabelTriangleMap()

mgx_EXPORT void mgx::generateLabelTriangleMap	(	const vvGraph &	S,
		std::map< int, triVector > &	cellTriangles
	)

goes through all triangles of the vvGraph and builds up a map from label to triangle vector

generateLabelVertexMap()

mgx_EXPORT std::map<int, std::vector<vertex> > mgx::generateLabelVertexMap

(

const vvGraph &

S

)

goes through all vertices of the vvGraph and builds up a map from label to vertex vector

generateSamplingDirections() [1/2]

void mgx::generateSamplingDirections	(	double	resolution,
		int	centerVarSteps,
		double	centerVarStepSize,
		Point3d	perpendicularPlane,
		std::set< Point3d >	perpPlaneNormals2,
		bool	enforceDivThroughNeighbor,
		std::vector< P3dDouble > &	samplingDirections
	)

generateSamplingDirections() [2/2]

void mgx::generateSamplingDirections	(	double	resolution,
		int	centerVarSteps,
		double	centerVarStepSize,
		std::vector< P3dDouble > &	samplingDirections
	)

generateSamplingDirectionsNew()

void mgx::generateSamplingDirectionsNew	(	int	nrPlanes,
		int	centerVarSteps,
		double	centerVarStepSize,
		std::vector< P3dDouble > &	samplingDirections
	)

returns the area of a polygon

Parameters

generateWeights()

mgx_EXPORT std::map<IntInt, double> mgx::generateWeights	(	std::map< IntInt, double >	neighborMap,
		bool	constWeight
	)

getBasisFromPlane()

template<typename T >

CU_HOST_DEVICE void mgx::getBasisFromPlane	(	const Point3(T) &	nrml,
		Point3(T)&	x,
		Point3(T) &	y,
		Point3(T) &	z
	)

Definition at line 307 of file Geometry.hpp.

getBBox()

mgxBase_EXPORT void mgx::getBBox	(	const HVec3F &	pts,
		Point3f *	bBox
	)

getColorFromLabel()

mgx_EXPORT QRgb mgx::getColorFromLabel

(

int

label

)

getDir()

mgx_EXPORT QString mgx::getDir

(

QString

file

)

Get the directory containing a file (base of the name only)

getFolder()

QTreeWidgetItem* mgx::getFolder	(	QString	name,
		QHash< QString, QTreeWidgetItem * > &	folders,
		QTreeWidget *	tree
	)

Find or create a folder from a process tree.

Parameters

name	Name of the folder to create, sub-folders are separated by '/'
folders	Map of previously created folders
tree	Tree in which the folders are created

getGaussianMask1D()

bool mgx::getGaussianMask1D ( const float  step, const float  sigma, HostVf &  mask, int &  radius  )

inline

Definition at line 19 of file ImageCuda.hpp.

getKeyOfMaxValue()

mgx_EXPORT int mgx::getKeyOfMaxValue

(

const std::map< int, double > &

mapToTest

)

getLabel()

mgx_EXPORT int mgx::getLabel	(	const vertex &	v1,
		const vertex &	v2,
		const vertex &	v3
	)

Return the label for a triangle.

Parameters

v1	vertices of the triangle
v2
v3

getLabelCount()

mgx_EXPORT bool mgx::getLabelCount	(	const vvGraph &	S,
		VtxIntMap &	labCount
	)

Count labels for each vertex in the graph.

Parameters

S	Graph to count labels
labCount	Map of vertex to label count

getOffset() [1/3]

CU_HOST_DEVICE size_t mgx::getOffset	(	const int	x,
		const int	y,
		const int	z,
		const Point3i &	size
	)

Definition at line 437 of file Geometry.hpp.

getOffset() [2/3]

CU_HOST_DEVICE size_t mgx::getOffset	(	const Point3i	p,
		const Point3i &	size
	)

Definition at line 448 of file Geometry.hpp.

getOffset() [3/3]

CU_HOST_DEVICE size_t mgx::getOffset	(	const uint	x,
		const uint	y,
		const uint	z,
		const Point3u &	size
	)

Definition at line 443 of file Geometry.hpp.

getOrRemoveCommonWall() [1/2]

std::vector<vertex> mgx::getOrRemoveCommonWall	(	Mesh *	m,
		std::vector< vertex > &	cellVtxs,
		bool	removeCommon,
		bool	includeEdgeOfShared
	)

getOrRemoveCommonWall() [2/2]

std::vector<Triangle> mgx::getOrRemoveCommonWall	(	Mesh *	mesh,
		std::vector< Triangle > &	cellTris,
		bool	removeCommon,
		bool	mergeDuplicated
	)

getPolygonNrml() [1/2]

mgx_EXPORT Point3d mgx::getPolygonNrml

(

std::vector< Point3d > &

pointsPolygon

)

getPolygonNrml

returns the normal of a polygon defined by its points by finding three points of the polygon that are not in a line and calculating their normal std::vector<Point3d> &pointsPolygon : the input point vector of polygon points int& idxP3 : by default the first two points are used, for the third point it is checked whether its on the line defined by the first two, this is the index of the first third point not on the line

getPolygonNrml() [2/2]

mgx_EXPORT Point3d mgx::getPolygonNrml	(	std::vector< Point3d > &	pointsPolygon,
		int &	idxP3
	)

getRoundMask3D()

bool mgx::getRoundMask3D ( const Point3i &  radius, HostVf &  mask  )

inline

Definition at line 47 of file ImageCuda.hpp.

getSharedTris()

std::set<Triangle> mgx::getSharedTris	(	const cell &	c1,
		const cell &	c2
	)

getSharedVtxs()

std::vector<Point3d> mgx::getSharedVtxs	(	const cell &	c1,
		const cell &	c2
	)

returns the area of a polygon

Parameters

getStep()

uint mgx::getStep ( uint  pos, uint  maxpos, size_t  stride, size_t  szof, size_t  mem  )

inline

Definition at line 555 of file ImageCuda.hpp.

getStride()

__device__ __host__ Point3i mgx::getStride ( const Point3i &  size )

inline

Definition at line 139 of file ImageCuda.hpp.

getThreadCount()

cuda_EXPORT uint mgx::getThreadCount	(	uint	threadPos,
		uint	totThreads
	)

getTotalThreads()

uint mgx::getTotalThreads ( DimEnum  dim, const Point3i  size  )

inline

Definition at line 516 of file ImageCuda.hpp.

getTrisOfCells()

std::vector<Triangle> mgx::getTrisOfCells	(	Mesh *	m,
		int	selectedLabel,
		bool	parentMode
	)

getVtxsOfCells()

std::vector<vertex> mgx::getVtxsOfCells	(	Mesh *	m,
		int	selectedLabel,
		bool	parentMode
	)

getXY()

__device__ __host__ void mgx::getXY ( uint  idx, const Point3i &  size, int &  x, int &  y  )

inline

Definition at line 113 of file ImageCuda.hpp.

getXYZ()

__device__ __host__ void mgx::getXYZ ( uint  idx, const Point3i &  size, int &  x, int &  y, int &  z  )

inline

Definition at line 131 of file ImageCuda.hpp.

getXZ()

__device__ __host__ void mgx::getXZ ( uint  idx, const Point3i &  size, int &  x, int &  z  )

inline

Definition at line 119 of file ImageCuda.hpp.

getYZ()

__device__ __host__ void mgx::getYZ ( uint  idx, const Point3i &  size, int &  y, int &  z  )

inline

Definition at line 125 of file ImageCuda.hpp.

holdMem()

cuda_EXPORT void mgx::holdMem

(

)

if()

mgx::if

(

area2

= =0

)

imageToWorld()

CU_HOST_DEVICE Point3f mgx::imageToWorld	(	const Point3i &	img,
		const Point3f &	step,
		const Point3f &	shift
	)

Definition at line 418 of file Geometry.hpp.

includeDir()

mgx_EXPORT QDir mgx::includeDir

(

)

Returns the includes directory.

initGPU()

cuda_EXPORT int mgx::initGPU

(

)

inplaceMatrixMultiply()

mgx_EXPORT void mgx::inplaceMatrixMultiply	(	std::vector< Point3d > &	P,
		const Matrix3d &	M
	)

inplaceMatrixMultiply P := P*M

inPrimCoord()

Point3d mgx::inPrimCoord	(	double	radiant,
		Point3d	dirRadRef,
		Point3d	dirLongRef
	)

insert()

template<typename VertexContent , typename EdgeContent >

const VVGraph<VertexContent, EdgeContent>::vertex_t& mgx::insert	(	const typename VVGraph< VertexContent, EdgeContent >::vertex_t &	a,
		const typename VVGraph< VertexContent, EdgeContent >::vertex_t &	b,
		VVGraph< VertexContent, EdgeContent > &	S
	)

Definition at line 102 of file Insert.hpp.

insertAfter()

template<class Graph >

Graph::edge_t mgx::insertAfter	(	const typename Graph::vertex_t &	v,
		const typename Graph::vertex_t &	ref,
		const typename Graph::vertex_t &	nv,
		Graph &	S
	)

Splice nv after ref in v if ref is not null.

Otherwise just insert the edge (v,nv) in S.

Definition at line 116 of file Insert.hpp.

insertBefore()

template<class Graph >

Graph::edge_t mgx::insertBefore	(	const typename Graph::vertex_t &	v,
		const typename Graph::vertex_t &	ref,
		const typename Graph::vertex_t &	nv,
		Graph &	S
	)

Splice nv before ref in v if ref is not null.

Otherwise just insert the edge (v,nv) in S.

Definition at line 129 of file Insert.hpp.

insideMeshGPU()

cuda_EXPORT int mgx::insideMeshGPU	(	const Point3i &	base,
		const Point3i &	size,
		const Point3f &	step,
		const Point3f &	shift,
		const HVec3F &	pts,
		const HVec3U &	tris,
		const HVec3F &	nrmls,
		HVecUS &	dstdata
	)

interpolate() [1/2]

template<typename T >

T CU_HOST_DEVICE mgx::interpolate	(	const Point3(T) &	t1,
		const Point3(T) &	t2,
		const Point3(T) &	t3,
		T	c1,
		T	c2,
		T	c3,
		const Point3(T) &	p
	)

Interpolate values on a triangle.

Definition at line 185 of file Geometry.hpp.

interpolate() [2/2]

template<typename T >

T CU_HOST_DEVICE mgx::interpolate	(	const T &	a,
		const T &	b,
		const T &	s
	)

Interpolate between values.

Definition at line 177 of file Geometry.hpp.

interpolateArrayIndex()

mgx_EXPORT double mgx::interpolateArrayIndex	(	double	value,
		double	min,
		double	max,
		double	newRange
	)

inverse() [1/5]

template<typename T >

CU_HOST_DEVICE Matrix<1, 1, T> mgx::inverse ( const Matrix< 1, 1, T > &  mat )

related

Definition at line 1001 of file Matrix.hpp.

inverse() [2/5]

template<typename T >

CU_HOST_DEVICE Matrix<2, 2, T> mgx::inverse ( const Matrix< 2, 2, T > &  mat )

related

Definition at line 1008 of file Matrix.hpp.

inverse() [3/5]

template<typename T >

CU_HOST_DEVICE Matrix<3, 3, T> mgx::inverse ( const Matrix< 3, 3, T > &  mat )

related

Definition at line 1022 of file Matrix.hpp.

inverse() [4/5]

template<typename T >

Matrix<4, 4, T> mgx::inverse ( const Matrix< 4, 4, T > &  m )

related

Definition at line 1041 of file Matrix.hpp.

inverse() [5/5]

template<size_t nRows, typename T >

CU_HOST_DEVICE Matrix<nRows, nRows, T> mgx::inverse ( const Matrix< nRows, nRows, T > &  mat )

related

Definition at line 1100 of file Matrix.hpp.

isDataPlanar()

mgx_EXPORT bool mgx::isDataPlanar

(

std::vector< Point3d > &

inputVertices

)

isDataPlanar

returns true if inputVertices are in one plane or false if they are true 3D points std::vector<Point3d> &inputVertices : the input point vector of the test points

isGuiThread()

bool mgx::isGuiThread ( )

inline

Definition at line 203 of file Misc.hpp.

isNan() [1/2]

CU_HOST_DEVICE bool mgx::isNan

(

double

s

)

Definition at line 149 of file Geometry.hpp.

isNan() [2/2]

CU_HOST_DEVICE bool mgx::isNan

(

float

s

)

Definition at line 148 of file Geometry.hpp.

jacobiPreCond()

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

void mgx::jacobiPreCond	(	DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &	m,
		DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &	a
	)

Definition at line 557 of file DistMatrix.hpp.

jacobiPreCondGPU()

template<typename T >

int mgx::jacobiPreCondGPU	(	DeviceVu *	nb,
		T *	mv,
		T *	me,
		T *	av,
		T *	ae
	)

Definition at line 376 of file DistMatrixCuda.hpp.

lengthCustomDirTensor3D()

mgxBase_EXPORT double mgx::lengthCustomDirTensor3D	(	SymmetricTensor	origTensor,
		Point3f	customDir
	)

libDir()

mgx_EXPORT QDir mgx::libDir

(

)

Returns the libraries directory.

lineLineIntersect()

template<typename T >

CU_HOST_DEVICE bool mgx::lineLineIntersect	(	Point3(T)	p1,
		Point3(T)	p2,
		Point3(T)	q1,
		Point3(T)	q2,
		T &	s,
		T &	u,
		Point3(T) &	intersect
	)

Line-Line Intersection returns whether two line segments intersect or not saves the location on where on the segments (s, u) and the intersection point (intersect) originally from CellMaker, only used in Join2DMeshes so far, not tested for true 3d lines.

Parameters

p1	Point 1 of line 1
p2	Point 2 of line 1
q1	Point 1 of line 2
q2	Point 2 of line 2
u1	& u2 Line segment 1
u1	& u2 Line segment 2
s	if 0 <= s <= 1, on line 1, s >= 0 ray intersect
u	if 0 <= u <= 1, on line 2, u >= 0 ray intersect
intersect	Intersection point

Returns

false if no intersection

Definition at line 262 of file Geometry.hpp.

lloydKMeans()

mgx_EXPORT bool mgx::lloydKMeans	(	std::vector< std::vector< double > > &	inputClusters,
		std::vector< AttrMap< int, double > > &	dataPoints,
		int	maxStep = -1,
		double	convergenceThreshold = 0.01
	)

k means function for n-D data (lloyds algorithm) NOTE: dimensions have to match, otherwise function returns false (size of each inputClusters vector == dataPoints.size())

Parameters

inputClusters	std::vector<std::vector<double> > vector of input clusters (could be random if none available)
dataPoints	std::vector<std::map<int, double> > vector of label -> data maps
maxStep	int max number of update steps, if negative it runs until less than 1% of points change

lloydKMeans2D()

mgx_EXPORT std::vector<Point2d> mgx::lloydKMeans2D	(	std::vector< Point2d > &	clusters,
		std::vector< Point2d > &	data,
		int	maxStep = -1
	)

k means function for 2D data (lloyds algorithm)

Parameters

clusters	std::vector<Point2d> input clusters (could be random if none available)
data	std::vector<Point2d> data points
maxStep	int max number of update steps, if negative it runs until less than 1% of points change

loadImage()

mgx_EXPORT bool mgx::loadImage	(	QString	filename,
		Image3D &	data,
		bool	allocate_data = false
	)

loadTIFFImage()

mgx_EXPORT bool mgx::loadTIFFImage	(	QString	filename,
		Image3D &	data,
		bool	allocate_data = false
	)

map() [1/2]

template<size_t dim, typename T , typename T1 >

CU_HOST_DEVICE Vector<dim, T> mgx::map	(	const T &(*)(const T1 &)	fct,
		const Vector< dim, T1 > &	v
	)

Definition at line 1380 of file Vector.hpp.

map() [2/2]

template<size_t dim, typename T , typename T1 >

CU_HOST_DEVICE Vector<dim, T> mgx::map	(	T(*)(const T1 &)	fct,
		const Vector< dim, T1 > &	v
	)

Definition at line 1395 of file Vector.hpp.

markMargin()

mgx_EXPORT void mgx::markMargin	(	vvGraph &	S,
		vertex	v,
		bool	remborders = true
	)

Mark the cells and tissue margin vertices.

Parameters

S	vvGraph to mark
v	Vertex to mark
remborders	If true, all vertices with -1 as label and not at the border between cells will be marked as 0.

markMargins() [1/2]

mgx_EXPORT void mgx::markMargins	(	vvGraph &	M,
		vvGraph &	S,
		bool	remborders = true
	)

Mark the cells and tissue margin vertices.

Parameters

M	Vertices to mark
S	Graph to mark
remborders	If true, all vertices with -1 as label and not at the border between cells will be marked as 0.

markMargins() [2/2]

mgx_EXPORT void mgx::markMargins	(	vvGraph &	S,
		bool	remborders = true
	)

Mark the cells and tissue margin vertices.

Parameters

S	vvGraph to mark
remborders	If true, all vertices with -1 as label and not at the border between cells will be marked as 0.

matrix_minor()

template<size_t nRows, typename T >

CU_HOST_DEVICE T mgx::matrix_minor	(	const Matrix< nRows, nRows, T > &	mat,
		size_t	i,
		size_t	j
	)

Definition at line 972 of file Matrix.hpp.

matrixInverseGSL()

mgx_EXPORT void mgx::matrixInverseGSL	(	std::vector< std::vector< double > > &	inputM,
		std::vector< std::vector< double > > &	outputM
	)

max()

template<typename T >

T CU_HOST_DEVICE mgx::max	(	const T	a,
		const T	b
	)

Definition at line 34 of file Util.hpp.

maxDiagonal()

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

double mgx::maxDiagonal

(

DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &

m

)

Definition at line 490 of file DistMatrix.hpp.

maxEntry()

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

double mgx::maxEntry

(

DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &

m

)

Definition at line 506 of file DistMatrix.hpp.

maxGPU()

template<typename T >

int mgx::maxGPU	(	T *	v,
		typename T::value_type::value_type &	r
	)

Definition at line 357 of file DistMatrixCuda.hpp.

maxOffDiagonal()

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

double mgx::maxOffDiagonal

(

DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &

m

)

Definition at line 498 of file DistMatrix.hpp.

maxPlaneSimilarity()

double mgx::maxPlaneSimilarity	(	AttrMap< int, CellDivisionAttr > &	cellDivs,
		CellDivisionAttr	cda
	)

medianGPU()

cuda_EXPORT int mgx::medianGPU	(	const Point3i &	imgSize,
		const Point3i &	radius,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

medianOfMediansGPU()

cuda_EXPORT int mgx::medianOfMediansGPU	(	const Point3i &	imgSize,
		const Point3i &	radius,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

memAvail()

cuda_EXPORT void mgx::memAvail

(

)

memLeft()

size_t mgx::memLeft	(	size_t	memrq,
		size_t	roomrq,
		size_t	mem
	)

mergeVertices()

mgx_EXPORT int mgx::mergeVertices	(	vvGraph &	S,
		const VtxVec &	vs
	)

Merge vertices, returns number of vertices deleted.

Parameters

S	Graph to subdivide
vs	vector of vertices to merge

mgxmToMgxc()

mgx_EXPORT bool mgx::mgxmToMgxc	(	const vvGraph &	srcS,
		vvGraph &	S,
		double	wallMax = 0
	)

Convert a normal (MGXM) mesh to a cell (MGXC) mesh.

Parameters

srcS	Source graph
S	destination graph
wallMax	Distance to use for keeping points on walls

min()

template<typename T >

CU_HOST_DEVICE T mgx::min	(	const T	a,
		const T	b
	)

Definition at line 26 of file Util.hpp.

minDiagonal()

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

double mgx::minDiagonal

(

DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &

m

)

Definition at line 515 of file DistMatrix.hpp.

minEntry()

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

double mgx::minEntry

(

DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &

m

)

Definition at line 531 of file DistMatrix.hpp.

minGPU()

template<typename T >

int mgx::minGPU	(	T *	v,
		typename T::value_type::value_type &	r
	)

Definition at line 338 of file DistMatrixCuda.hpp.

minOffDiagonal()

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

double mgx::minOffDiagonal

(

DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &

m

)

Definition at line 523 of file DistMatrix.hpp.

multGPU() [1/3]

template<typename TM , typename TV >

int mgx::multGPU	(	DeviceVu *	nb,
		TM *	mv,
		TM *	me,
		TV *	v,
		TV *	r
	)

Definition at line 256 of file DistMatrixCuda.hpp.

multGPU() [2/3]

template<typename T >

int mgx::multGPU	(	T *	v,
		typename T::value_type::value_type	a,
		T *	r
	)

Definition at line 218 of file DistMatrixCuda.hpp.

multGPU() [3/3]

template<typename T >

int mgx::multGPU	(	T *	v1,
		T *	v2,
		typename T::value_type::value_type &	r
	)

Definition at line 230 of file DistMatrixCuda.hpp.

multMatrix4Point3()

template<typename T >

CU_HOST_DEVICE Vector<3, T> mgx::multMatrix4Point3	(	const Matrix< 4, 4, T > &	m,
		const Vector< 3, T > &	p
	)

Multiply openGL 4D matrix by 3D point and return 3D point.

Definition at line 167 of file Geometry.hpp.

nearestPointOnMesh()

mgx_EXPORT Point3d mgx::nearestPointOnMesh	(	const Point3d &	targetPoint,
		const vvGraph &	S
	)

nearestVertexOnMesh()

mgx_EXPORT vertex mgx::nearestVertexOnMesh	(	const Point3d &	targetPoint,
		const vvGraph &	S
	)

nearMeshGPU()

cuda_EXPORT int mgx::nearMeshGPU	(	const Point3i &	base,
		const Point3i &	size,
		const Point3f &	step,
		const Point3f &	shift,
		const HVec3F &	pts,
		const HVec3F &	nrmls,
		float	minDist,
		float	maxDist,
		HVecUS &	dstdata
	)

neighborhood2D()

mgx_EXPORT void mgx::neighborhood2D	(	vvGraph &	S,
		std::map< IntInt, double > &	neighMap,
		QString	weightType = "",
		bool	ignoreOutside = true
	)

creates a wall map with the neighboring cells as key (pair) and the wall length as value

Parameters

S

vvGraph

neighborhoodGraph()

mgx_EXPORT bool mgx::neighborhoodGraph	(	const vvGraph &	S,
		double	tolerance,
		NhbdGraphInfo &	info,
		bool	throwError = true
	)

neighborhoodGraphLocal()

bool mgx::neighborhoodGraphLocal	(	const vvGraph &	S,
		double	tolerance,
		std::map< int, double > &	cellWallArea,
		std::map< IntInt, double > &	wallArea,
		std::map< int, double > &	outsideWallArea
	)

calculates the neighborhood graph, return data structure for total cell wall area and shared wall area between neighboring cells

Parameters

S	vvGraph
tolerance	double
cellAtlasData	RootCellProcessing

norm() [1/3]

template<size_t nRows, size_t nCols, typename T >

CU_HOST_DEVICE T mgx::norm ( const Matrix< nRows, nCols, T > &  mat )

related

Definition at line 1134 of file Matrix.hpp.

norm() [2/3]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

ScalarT mgx::norm

(

DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &

m

)

Definition at line 548 of file DistMatrix.hpp.

norm() [3/3]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

ScalarT mgx::norm

(

DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &

v

)

Definition at line 540 of file DistMatrix.hpp.

normalizeMaskScale()

void mgx::normalizeMaskScale ( HostVf &  mask )

inline

Definition at line 69 of file ImageCuda.hpp.

normsq()

template<size_t nRows, size_t nCols, typename T >

CU_HOST_DEVICE T mgx::normsq ( const Matrix< nRows, nCols, T > &  mat )

related

Definition at line 1123 of file Matrix.hpp.

offset()

CU_HOST_DEVICE size_t mgx::offset	(	uint	x,
		uint	y,
		uint	z,
		uint	xsz,
		uint	ysz
	)

Definition at line 431 of file Geometry.hpp.

operator*() [1/7]

template<size_t nRows, size_t intSize, size_t nCols, typename T >

CU_HOST_DEVICE Matrix<nRows, nCols, T> mgx::operator*	(	const Matrix< nRows, intSize, T > &	mat1,
		const Matrix< intSize, nCols, T > &	mat2
	)

Definition at line 932 of file Matrix.hpp.

operator*() [2/7]

Quaternion mgx::operator* ( const Quaternion &  q, double  s  )

inline

Definition at line 222 of file Quaternion.hpp.

operator*() [3/7]

template<size_t nRows, size_t nCols, typename T >

CU_HOST_DEVICE Vector<nCols, T> mgx::operator* ( const Vector< nCols, T > &  vec, const Matrix< nRows, nCols, T > &  mat  )

related

Definition at line 919 of file Matrix.hpp.

operator*() [4/7]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

const MVMultOp<DistNhbdT, MatrixT, VectorT, ScalarT> mgx::operator*	(	DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_mat,
		DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_vec
	)

Definition at line 207 of file DistMatrix.hpp.

operator*() [5/7]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

const MSMultOp<DistNhbdT, MatrixT, VectorT, ScalarT> mgx::operator*	(	DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_mat,
		ScalarT	p_a
	)

Definition at line 198 of file DistMatrix.hpp.

operator*() [6/7]

Quaternion mgx::operator* ( double  s, const Quaternion &  q  )

inline

Definition at line 215 of file Quaternion.hpp.

operator*() [7/7]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

const VSMultOp<DistNhbdT, MatrixT, VectorT, ScalarT> mgx::operator*	(	DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_vec,
		ScalarT	p_a
	)

Definition at line 159 of file DistMatrix.hpp.

operator+() [1/3]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

const VSaxpyOp<DistNhbdT, MatrixT, VectorT, ScalarT> mgx::operator+	(	const VSMultOp< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_VSMultOp,
		DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_vec
	)

Definition at line 168 of file DistMatrix.hpp.

operator+() [2/3]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

const MMAddOp<DistNhbdT, MatrixT, VectorT, ScalarT> mgx::operator+	(	DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_mat1,
		DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_mat2
	)

Definition at line 178 of file DistMatrix.hpp.

operator+() [3/3]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

const VVAddOp<DistNhbdT, MatrixT, VectorT, ScalarT> mgx::operator+	(	DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_vec1,
		DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_vec2
	)

Definition at line 139 of file DistMatrix.hpp.

operator-() [1/2]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

const MMSubOp<DistNhbdT, MatrixT, VectorT, ScalarT> mgx::operator-	(	DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_mat1,
		DMatrix< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_mat2
	)

Definition at line 188 of file DistMatrix.hpp.

operator-() [2/2]

template<typename DistNhbdT , typename MatrixT , typename VectorT , typename ScalarT >

const VVSubOp<DistNhbdT, MatrixT, VectorT, ScalarT> mgx::operator-	(	DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_vec1,
		DVector< DistNhbdT, MatrixT, VectorT, ScalarT > &	p_vec2
	)

Definition at line 149 of file DistMatrix.hpp.

operator->*() [1/6]

template<typename ValueT >

ValueT& mgx::operator->*	(	const edge &	e,
		AttrMap< VtxVtxPair, ValueT > &	map
	)

Definition at line 1471 of file Attributes.hpp.

operator->*() [2/6]

template<typename ValueT >

ValueT& mgx::operator->*	(	const edge &	e,
		AttrMap< VtxVtxPair, ValueT > *	map
	)

Definition at line 1476 of file Attributes.hpp.

operator->*() [3/6]

template<typename KeyT , typename ValueT >

ValueT& mgx::operator->*	(	const KeyT &	key,
		AttrMap< KeyT, ValueT > &	map
	)

Definition at line 1448 of file Attributes.hpp.

operator->*() [4/6]

template<typename KeyT , typename ValueT >

ValueT& mgx::operator->*	(	const KeyT &	key,
		AttrMap< KeyT, ValueT > *	map
	)

Definition at line 1453 of file Attributes.hpp.

operator->*() [5/6]

template<typename ValueT >

ValueT& mgx::operator->*	(	const wall &	e,
		AttrMap< CellCellPair, ValueT > &	map
	)

Definition at line 1465 of file Attributes.hpp.

operator->*() [6/6]

template<typename ValueT >

ValueT& mgx::operator->*	(	const wall &	e,
		AttrMap< CellCellPair, ValueT > *	map
	)

Definition at line 1460 of file Attributes.hpp.

operator<<() [1/6]

QDataStream& mgx::operator<<	(	QDataStream &	s,
		const Colorbar::Position &	pos
	)

operator<<() [2/6]

QTextStream& mgx::operator<<	(	QTextStream &	s,
		const Colorbar::Position &	pos
	)

operator<<() [3/6]

QTextStream& mgx::operator<< ( QTextStream &  s, const GLSLValue &  ut  )

inline

Definition at line 258 of file Shader.hpp.

operator<<() [4/6]

template<typename VertexContent , typename Alloc , typename charT >

std::basic_ostream<charT>& mgx::operator<<	(	std::basic_ostream< charT > &	ss,
		const Vertex< VertexContent > &	v
	)

Definition at line 372 of file Vertex.hpp.

operator<<() [5/6]

std::ostream& mgx::operator<<	(	std::ostream &	s,
		const Colorbar::Position &	pos
	)

operator<<() [6/6]

std::ostream& mgx::operator<< ( std::ostream &  s, const GLSLValue &  ut  )

inline

Definition at line 266 of file Shader.hpp.

operator>>() [1/5]

QDataStream& mgx::operator>>	(	QDataStream &	s,
		Colorbar::Position &	pos
	)

operator>>() [2/5]

QTextStream& mgx::operator>>	(	QTextStream &	s,
		Colorbar::Position &	pos
	)

operator>>() [3/5]

QTextStream& mgx::operator>> ( QTextStream &  s, GLSLValue &  ut  )

inline

Definition at line 262 of file Shader.hpp.

operator>>() [4/5]

std::istream& mgx::operator>>	(	std::istream &	s,
		Colorbar::Position &	pos
	)

operator>>() [5/5]

std::istream& mgx::operator>> ( std::istream &  s, GLSLValue &  ut  )

inline

Definition at line 270 of file Shader.hpp.

orderPolygonSegs()

mgx_EXPORT std::vector<Point3d> mgx::orderPolygonSegs	(	std::vector< std::pair< Point3d, Point3d > > &	polygonSegs,
		bool	keepPolySegs = true
	)

orderPolygonSegs

put segments (pairs of Point3d) into a vector in the correct order (starting with the first seg) example: input ((2,3),(5,1),(3,5),(1,2)) output (2,3,5,1) std::vector<std::pair<Point3d,Point3d> > &polygonSegs : vector of segments

orderPolygonSegsMulti()

mgx_EXPORT std::vector<std::vector<Point3d> > mgx::orderPolygonSegsMulti

(

std::vector< std::pair< Point3d, Point3d > > &

polygonSegs

)

orthogonalVector()

mgx_EXPORT Point3d mgx::orthogonalVector

(

Point3d

vec

)

orthogonalVector

returns a vector orthogonal to the input vector Point3d vec : the input vector

OuterProduct()

Matrix3d mgx::OuterProduct ( Point3d  p1, Point3d  p2  )

inline

Definition at line 49 of file SymmetricTensor.hpp.

planeLineIntersect()

template<typename T >

CU_HOST_DEVICE bool mgx::planeLineIntersect	(	const Point3(T) &	p,
		const Point3(T) &	nrml,
		const Point3(T) &	u1,
		const Point3(T) &	u2,
		T &	s,
		Point3(T) &	u
	)

Plane-Line Intersection.

Parameters

p	Point
n	Normal
u1	& u2 Line segment
s	if 0 <= s <= 1, on line, s >= 0 ray intersect
u	Intersection point

Returns

false if parallel

Definition at line 217 of file Geometry.hpp.

planePolygonIntersect()

bool mgx::planePolygonIntersect	(	Point3d	planeNrml,
		Point3d	planePos,
		std::vector< Point3d >	polygonVtxs
	)

planeSegmentIntersect()

bool mgx::planeSegmentIntersect	(	const Point3d &	p,
		const Point3d &	nrml,
		const Point3d &	u1,
		const Point3d &	u2,
		Point3d &	intersectP
	)

Point3()

template<typename T >

CU_HOST_DEVICE const const mgx::Point3

(

T

)

const &

pointInCone()

bool mgx::pointInCone	(	Point3d	axisVec,
		Point3d &	coneTop,
		Point3d &	coneBase,
		double	coneAngle,
		Point3d &	pointToTest
	)

return true if a point is inside a cone

Parameters

axisVec	Point3d axis vector of the cone (= coneTop - coneBase)
coneTop	Point3d point at the top of the cone
coneBase	Point3d midpoint of the bas of the cone
coneAngle	double angle of the cone (in rad)
pointToTest	Point3d test point

pointInPolygon()

mgx_EXPORT bool mgx::pointInPolygon	(	Point3d	pointToTest,
		std::vector< Point3d > &	polygon,
		bool	debug = false
	)

processDirs()

mgx_EXPORT QList<QDir> mgx::processDirs

(

)

Returns processes directory.

processNonSepOP()

template<typename opT , typename T >

int mgx::processNonSepOP	(	opT	op,
		const Point3i &	imgSize,
		const Point3i &	radius,
		const thrust::host_vector< T > &	srcData,
		thrust::host_vector< T > &	dstData
	)

Definition at line 804 of file ImageCuda.hpp.

processSepOP()

template<typename opT , typename T >

int mgx::processSepOP	(	opT	opx,
		opT	opy,
		opT	opz,
		const Point3i &	imgSize,
		const Point3i &	radius,
		const thrust::host_vector< T > &	srcData,
		thrust::host_vector< T > &	dstData
	)

Definition at line 703 of file ImageCuda.hpp.

progressAdvance() [1/2]

bool mgx::progressAdvance

(

)

progressAdvance() [2/2]

mgx_EXPORT bool mgx::progressAdvance

(

int

step

)

progressCancel()

mgx_EXPORT void mgx::progressCancel

(

)

progressCanceled()

mgx_EXPORT bool mgx::progressCanceled

(

)

progressCancelled()

bool mgx::progressCancelled

(

)

progressSetMax()

mgx_EXPORT void mgx::progressSetMax

(

int

steps = 0

)

progressSetMsg() [1/3]

mgx_EXPORT void mgx::progressSetMsg

(

const char *

msg

)

progressSetMsg() [2/3]

mgx_EXPORT void mgx::progressSetMsg

(

const QString &

msg

)

progressSetMsg() [3/3]

mgx_EXPORT void mgx::progressSetMsg

(

const std::string &

msg

)

progressStart() [1/4]

mgx_EXPORT void mgx::progressStart	(	const char *	msg,
		int	steps = 0,
		bool	allowCancel = true
	)

progressStart() [2/4]

mgx_EXPORT void mgx::progressStart	(	const QString &	msg,
		int	steps = 0,
		bool	allowCancel = true
	)

progressStart() [3/4]

void mgx::progressStart	(	const std::string &	msg,
		int	steps
	)

progressStart() [4/4]

mgx_EXPORT void mgx::progressStart	(	const std::string &	msg,
		int	steps = 0,
		bool	allowCancel = true
	)

progressStop()

mgx_EXPORT void mgx::progressStop

(

)

projectPointOnPlane()

Point3d mgx::projectPointOnPlane ( const Point3d &  P, const Point3d &  Q, const Point3d &  N  )

inline

Definition at line 453 of file Geometry.hpp.

projectPointsOnPlane()

mgx_EXPORT bool mgx::projectPointsOnPlane	(	std::vector< Point3d > &	points,
		Point3d	planePos,
		Point3d	planeNrml
	)

projectPointsOnPlane

project a vector of points onto a plane std::vector<Point3d> &points : the point vector, input AND output Point3d planePos : position of the plane Point3d planeNrml : normal of the plane

qdemangle()

mgx_EXPORT QString mgx::qdemangle

(

std::string

s

)

Demangle all the words in the string.

Returns

The string with all symbols demangled.

ran() [1/5]

template<size_t dim, typename T >

Vector<dim, T> mgx::ran

(

const Vector< dim, T > &

V

)

Generate a random vector uniformely distributed between Vector(0) and V.

Definition at line 67 of file Random.hpp.

ran() [2/5]

mgx_EXPORT double mgx::ran

(

double

M

)

Generate a random number uniformly distributed between 0 and M.

ran() [3/5]

mgx_EXPORT float mgx::ran

(

float

M

)

Generate a random number uniformly distributed between 0 and M.

ran() [4/5]

mgx_EXPORT long double mgx::ran

(

long double

M

)

Generate a random number uniformly distributed between 0 and M.

ran() [5/5]

template<typename T >

double mgx::ran

(

T

M

)

Generate a random number uniformly distributed between 0 and M.

Definition at line 60 of file Random.hpp.

ranInt() [1/3]

mgx_EXPORT long int mgx::ranInt

(

)

Returns a random number between 0 and RAND_MAX.

Returns a vector of random numbers between 0 and RAND_MAX.

Definition at line 107 of file Random.hpp.

ranInt() [2/3]

template<size_t dim, typename T >

Vector<dim, T> mgx::ranInt

(

const Vector< dim, T > &

n

)

Returns a vector of random numbers.

Parameters

n	Vector with the maximum number for each dimension

Definition at line 140 of file Random.hpp.

ranInt() [3/3]

mgx_EXPORT long int mgx::ranInt

(

long int

n

)

Returns a random number between 0 and n (excluded), for n <= RAND_MAX.

rayTriangleIntersect()

template<typename T >

CU_HOST_DEVICE int mgx::rayTriangleIntersect	(	const Point3(T) &	r0,
		const Point3(T) &	r1,
		const Point3(T) &	t0,
		const Point3(T) &	t1,
		const Point3(T) &	t2,
		Point3(T) &	intp
	)

Definition at line 332 of file Geometry.hpp.

readAttr() [1/26]

bool mgx::readAttr ( BezierSurface::VertexData &  m, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 94 of file BezierSurface.hpp.

readAttr() [2/26]

bool mgx::readAttr ( CellAtlasConfig &  data, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 155 of file RootCellProcessing.hpp.

readAttr() [3/26]

bool mgx::readAttr ( CellAtlasData &  m, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 145 of file RootCellProcessing.hpp.

readAttr() [4/26]

template<>

bool mgx::readAttr ( CellCellPair &  pr, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 387 of file Attributes.hpp.

readAttr() [5/26]

bool mgx::readAttr ( CellDivisionAttr &  m, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 119 of file CellDivision.hpp.

readAttr() [6/26]

template<>

bool mgx::readAttr ( Colorb &  color, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 462 of file Attributes.hpp.

readAttr() [7/26]

bool mgx::readAttr ( DivisionDataNew &  dd, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 149 of file CellDivision.hpp.

readAttr() [8/26]

bool mgx::readAttr ( HejnowiczSurface::VertexData &  m, const QByteArray &  ba, size_t &  pos  )

inline

Serialize read for Vertex data.

Definition at line 188 of file HejnowiczSurface.hpp.

readAttr() [9/26]

template<size_t n, size_t m, typename T >

bool mgx::readAttr	(	Matrix< n, m, T > &	data,
		const QByteArray &	ba,
		size_t &	pos
	)

Definition at line 250 of file Attributes.hpp.

readAttr() [10/26]

bool mgx::readAttr ( MeinhardtAI::CellData &  m, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 233 of file DynamXProcessMorphogens.hpp.

readAttr() [11/26]

bool mgx::readAttr ( PolarSurface::VertexData &  m, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 115 of file PolarSurface.hpp.

readAttr() [12/26]

template<>

bool mgx::readAttr ( QByteArray &  qba, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 446 of file Attributes.hpp.

readAttr() [13/26]

template<>

bool mgx::readAttr ( QString &  data, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 413 of file Attributes.hpp.

readAttr() [14/26]

template<>

bool mgx::readAttr ( QStringList &  data, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 431 of file Attributes.hpp.

readAttr() [15/26]

bool mgx::readAttr ( Solver::EdgData &  m, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 189 of file Solver.hpp.

readAttr() [16/26]

bool mgx::readAttr ( Solver::VtxData &  m, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 179 of file Solver.hpp.

readAttr() [17/26]

template<typename KeyT , typename ValueT >

bool mgx::readAttr ( std::map< KeyT, ValueT > &  data, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 487 of file Attributes.hpp.

readAttr() [18/26]

template<typename T , typename U >

bool mgx::readAttr	(	std::pair< T, U > &	data,
		const QByteArray &	ba,
		size_t &	pos
	)

Definition at line 274 of file Attributes.hpp.

readAttr() [19/26]

template<typename T >

bool mgx::readAttr ( std::vector< T > &  data, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 471 of file Attributes.hpp.

readAttr() [20/26]

template<>

bool mgx::readAttr ( SymmetricTensor &  data, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 282 of file Attributes.hpp.

readAttr() [21/26]

template<typename T >

bool mgx::readAttr	(	T &	data,
		const QByteArray &	ba,
		size_t &	pos
	)

Read the attribute value from a QByteArray.

Definition at line 244 of file Attributes.hpp.

readAttr() [22/26]

template<>

bool mgx::readAttr ( Triangle &  t, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 336 of file Attributes.hpp.

readAttr() [23/26]

template<size_t n>

bool mgx::readAttr	(	Vector< n, Colorb > &	data,
		const QByteArray &	ba,
		size_t &	pos
	)

Definition at line 265 of file Attributes.hpp.

readAttr() [24/26]

template<size_t n, typename T >

bool mgx::readAttr	(	Vector< n, T > &	data,
		const QByteArray &	ba,
		size_t &	pos
	)

Definition at line 259 of file Attributes.hpp.

readAttr() [25/26]

template<>

bool mgx::readAttr ( vertex &  v, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 290 of file Attributes.hpp.

readAttr() [26/26]

template<>

bool mgx::readAttr ( VtxVtxPair &  pr, const QByteArray &  ba, size_t &  pos  )

inline

Definition at line 308 of file Attributes.hpp.

registerSystemProcesses()

void mgx_EXPORT mgx::registerSystemProcesses

(

)

reportGLError()

bool mgx::reportGLError ( const QString &  str, const char *  file, int  line  )

inline

Definition at line 28 of file GL.hpp.

resize()

mgx_EXPORT HVecUS mgx::resize	(	const HVecUS &	data,
		const Point3i &	before,
		const Point3i &	after,
		bool	center
	)

resolvePath()

mgx_EXPORT QString mgx::resolvePath

(

QString

path

)

Return the absolute file path, resolving things like environement variables and '~' for $HOME.

resourceDir()

mgx_EXPORT QDir mgx::resourceDir

(

)

Returns resource directory.

return()

mgx::return

(

nrml ^

c3 *(p2 - p1)+c1 *(p3 - p2)+c2 *(p1 - p3)

)

reverseVector()

mgx_EXPORT void mgx::reverseVector

(

std::vector< cell > &

input

)

rotatePointsIntoXY()

mgx_EXPORT void mgx::rotatePointsIntoXY	(	Point3d	polygonNormal,
		std::vector< Point3d > &	pointsPolygon,
		Matrix3d &	inv_rot_polygon_plane
	)

rotatePointsIntoXY

rotate (planar) (polygon) points into the XY plane

NOTE: the new position will be parallel to the XY plane, but not necessarily in z=0 position. points have to have their original z value, if it is required to rotate them back into the original position

---

Point3d polygonNormal : normal of the polygon plane std::vector<Point3d>& pointsPolygon : the point vector, input AND output Matrix3d& inv_rot_polygon_plane : inverse of the resulting rotation matrix (in case it has to be rotated back)

saveImage()

mgx_EXPORT bool mgx::saveImage	(	QString	filename,
		const Image3D &	data,
		QString	type = "CImg Auto",
		unsigned int	nb_digits = 0
	)

savePLYCellGraph()

bool mgx::savePLYCellGraph	(	Mesh *	mesh,
		const QString &	filename,
		bool	binary
	)

saveTIFFImage()

mgx_EXPORT bool mgx::saveTIFFImage	(	QString	filename,
		const Image3D &	data
	)

saxpyGPU()

template<typename T >

int mgx::saxpyGPU	(	T *	v1,
		T *	v2,
		typename T::value_type::value_type	a,
		T *	r
	)

Definition at line 312 of file DistMatrixCuda.hpp.

separateIdenticalVtxs()

void mgx::separateIdenticalVtxs

(

const cell &

c

)

setCurrentPath()

mgx_EXPORT bool mgx::setCurrentPath

(

const QString &

path

)

Set the current path.

setHoldMemGPU()

cuda_EXPORT int mgx::setHoldMemGPU

(

uint

holdmem

)

setNormal()

mgx_EXPORT bool mgx::setNormal	(	const vvGraph &	S,
		const vertex &	v
	)

Set the normal in a single vertex.

Parameters

S	vvGraph to set normal on
v	vertex to set

setNormals()

mgx_EXPORT int mgx::setNormals

(

const vvGraph &

S

)

Set the normals in a graph.

Parameters

S	vvGraph to set normal on

sharpenGPU()

cuda_EXPORT int mgx::sharpenGPU	(	const Point3i &	imgSize,
		const Point3f &	imgStep,
		const Point3f &	sigma,
		const float	amount,
		const HVecUS &	srcdata,
		HVecUS &	dstdata
	)

shield()

QString mgx::shield ( QString  s )

inline

Create representation of a string that can be written in a single line, without spaces.

Definition at line 89 of file Misc.hpp.

shield_python()

QString mgx::shield_python ( QString  s )

inline

Shield a string to send it to the python interpreter.

Definition at line 113 of file Misc.hpp.

shiftMap()

mgx_EXPORT std::map<int,int> mgx::shiftMap	(	std::map< int, double > &	mapToShift,
		int	shift
	)

signedTetraVolume()

template<typename T >

CU_HOST_DEVICE T mgx::signedTetraVolume	(	const Point3(T) &	a,
		const Point3(T) &	b,
		const Point3(T) &	c
	)

Definition at line 299 of file Geometry.hpp.

simulateDivision2D()

void mgx::simulateDivision2D	(	std::vector< vertex > &	cellContour,
		Point3d &	divP,
		Point3d	divNormal,
		std::vector< P3dDouble > &	samplingDirections,
		std::vector< CellDivision > &	allDivisions,
		Point3d &	shortestPlaneNrml,
		double &	shortesPlaneDispl
	)

spliceNhbs()

template<typename GraphT >

bool mgx::spliceNhbs	(	GraphT &	S,
		typename GraphT::vertex_t	a,
		typename GraphT::vertex_t	b
	)

Splice the neighborhood of b into a (so we can delete b)

Parameters

S	Graph to splice
a	vertex whose neighborhood will change
b	vertex whose neighborhood will be added to a
sDiv	subdivision object to propagate attributes

Definition at line 51 of file GraphUtils.hpp.

splitEdge()

mgx_EXPORT bool mgx::splitEdge	(	vvGraph &	S,
		vertex	v1,
		vertex	v2,
		Subdivide *	sDiv = 0
	)

Split an edge in the S graph.

Parameters

S	Graph with edge to split
a	first vertex on edge to split
b	second vertex on edge to split
sDiv	subdivision object to propagate attributes

sran()

mgx_EXPORT void mgx::sran

(

unsigned int

seed

)

Initialize the random number generator.

sran_time()

mgx_EXPORT unsigned int mgx::sran_time

(

)

Initialize the random number with the current time of the day (in microsecond)

Returns

the seed used.

stringToColorb()

Colorb mgx::stringToColorb

(

const QString &

s

)

Map Gui input string to Colorb.

stringToCompMode()

comp::CompositeMode mgx::stringToCompMode

(

const QString &

s

)

Map Gui input string to Composition mode.

stringToPoint2d()

Point2d mgx::stringToPoint2d ( const QString &  s )

inline

Definition at line 180 of file Misc.hpp.

stringToPoint2f()

Point2f mgx::stringToPoint2f ( const QString &  s )

inline

Definition at line 147 of file Misc.hpp.

stringToPoint2i()

Point2i mgx::stringToPoint2i ( const QString &  s )

inline

Definition at line 158 of file Misc.hpp.

stringToPoint2u()

Point2u mgx::stringToPoint2u ( const QString &  s )

inline

Definition at line 169 of file Misc.hpp.

stringToPoint3d()

Point3d mgx::stringToPoint3d ( const QString &  s )

inline

Convert a string to Point3d.

Definition at line 136 of file Misc.hpp.

stringToPoint3u()

Point3u mgx::stringToPoint3u ( const QString &  s )

inline

Definition at line 191 of file Misc.hpp.

stripCurrentDir()

mgx_EXPORT QString mgx::stripCurrentDir

(

QString

file

)

Returns the path relative to the current directory.

stripDir()

mgx_EXPORT QString mgx::stripDir	(	const QString &	dir,
		QString	file
	)

Remove a directory from the file path.

subdivideBisect()

mgx_EXPORT bool mgx::subdivideBisect	(	vvGraph &	S,
		const vertex &	v1,
		const vertex &	v2,
		const vertex &	v3,
		VtxVec *	vs = 0,
		Subdivide *	sDiv = 0
	)

Subdivide triangle with a propagating bisection that gives good triangles.

Parameters

S	Graph to subdivide
v1	First vertex of the triangle to divide
v2	Second vertex of the triangle to divide
v3	Third vertex of the triangle to divide
selected	If true, new vertices will be selected
vs	If non-NULL, vertices inserted are appended

subtractGPU()

template<typename T >

int mgx::subtractGPU	(	T *	v1,
		T *	v2,
		T *	r
	)

Definition at line 300 of file DistMatrixCuda.hpp.

supportedImageReadFormats()

mgx_EXPORT QStringList mgx::supportedImageReadFormats

(

)

supportedImageWriteFormats()

mgx_EXPORT QStringList mgx::supportedImageWriteFormats

(

)

swap() [1/2]

template<typename Key , typename Compare , typename Allocator >

void mgx::swap	(	multiset_vector< Key, Compare, Allocator > &	v1,
		multiset_vector< Key, Compare, Allocator > &	v2
	)

Definition at line 543 of file SetVector.hpp.

swap() [2/2]

template<typename Key , typename Compare , typename Allocator >

void mgx::swap	(	set_vector< Key, Compare, Allocator > &	v1,
		set_vector< Key, Compare, Allocator > &	v2
	)

Definition at line 785 of file SetVector.hpp.

swapMetaData()

void mgx_EXPORT mgx::swapMetaData	(	Store *	s1,
		Store *	s2
	)

systemSolveGSL()

mgx_EXPORT void mgx::systemSolveGSL	(	std::vector< std::vector< double > > &	inputM,
		std::vector< double > &	x
	)

tie()

template<typename T , typename U >

refpair<T, U> mgx::tie ( T &  x, U &  y  )

inline

Tie two variables to the values of a pair.

Example:

std::pair<int,double> p(1,2.5);
int a;
double b;
tie(a,b) = p;

At the end, a is 1 and b is 2.5

Definition at line 67 of file Tie.hpp.

toVoxelsCeil()

template<typename T >

CU_HOST_DEVICE Point3u mgx::toVoxelsCeil	(	const Point3(T) &	p,
		const Point3(T) &	step
	)

Definition at line 153 of file Geometry.hpp.

transpose()

template<size_t nRows, size_t nCols, typename T >

CU_HOST_DEVICE Matrix<nCols, nRows, T> mgx::transpose ( const Matrix< nRows, nCols, T > &  mat )

related

Definition at line 1114 of file Matrix.hpp.

triangleArea()

template<typename T >

CU_HOST_DEVICE T mgx::triangleArea	(	const Point3(T) &	a,
		const Point3(T) &	b,
		const Point3(T) &	c
	)

Definition at line 293 of file Geometry.hpp.

triangleOrientationCheck()

mgx_EXPORT bool mgx::triangleOrientationCheck	(	std::vector< Point3i > &	triList,
		int	idxRefTri = -1
	)

triangleOrientationCheck

check the orientation of all triangles and flip them if necessary, hereby the first one is considered as properly oriented NOTE: this function is not 100% bug free! std::vector<Point3i>& triList : vector of tris

triangulateDelaunay2D()

mgx_EXPORT void mgx::triangulateDelaunay2D	(	const std::vector< Point2f > &	pList,
		std::vector< Point2f > &	ptList,
		std::vector< Point3i > &	triList
	)

triangulatePolygon()

mgx_EXPORT void mgx::triangulatePolygon	(	float	maxArea,
		const std::vector< Point2f > &	pList,
		const std::vector< Point2i > &	segList,
		std::vector< Point2f > &	ptList,
		std::vector< Point3i > &	triList,
		std::vector< Point2i > &	segtList,
		bool	boundary = false,
		bool	addPointsCenter = true
	)

triangulatePolygon3D()

mgx_EXPORT bool mgx::triangulatePolygon3D	(	float	maxArea,
		Point3d	polygonNormal,
		std::vector< Point3d > &	pointsPolygon,
		std::vector< Point3i > &	triList,
		std::vector< Point3d > &	ptList,
		bool	boundary,
		bool	inOrder,
		bool	pointsCenter
	)

triangulatePolygon3D

takes a vector of polygon corner points in a plane and triangulates the polygon the input polygon can either be arbitrary with its points in order or convex with unordered points parms IMPORTANT NOTE: this function is not necessarily bug-free and could cause infinite loops float maxArea : maximum triangle area of resulting triangulation Point3d polygonNormal : normal of the input polygon std::vector<Point3d> &pointsPolygon : points of the input polygon std::vector<Point3i> &triList : output triangle list std::vector<Point3d> &ptList : output point list bool boundary : if true also allow to subdivide the border segments that are longer than sqrt(maxArea*2) bool inOrder : if true the input points are in order; if false points will be ordered automatically assuming convexity

triIndex()

mgx_EXPORT Point3i mgx::triIndex

(

Point3i

t

)

trim()

template<typename T >

CU_HOST_DEVICE T mgx::trim	(	const T	x,
		const T	minx,
		const T	maxx
	)

Definition at line 42 of file Util.hpp.

unregisterSystemProcesses()

void mgx_EXPORT mgx::unregisterSystemProcesses

(

)

unshield()

QString mgx::unshield ( QString  s )

inline

Retrieve a string that has been shielded with shield.

Definition at line 101 of file Misc.hpp.

unshield_python()

QString mgx::unshield_python ( QString  s )

inline

Retrieve a string that is retrieved from the python representation.

Definition at line 124 of file Misc.hpp.

userMem()

size_t mgx::userMem

(

)

userProcessDirs()

mgx_EXPORT QList<QDir> mgx::userProcessDirs

(

)

Returns user processes directory.

vIndex()

mgx_EXPORT int mgx::vIndex	(	const Point3d &	pos,
		Point3dIntMap &	vMap,
		float	tolerance
	)

vMapColor() [1/2]

uint mgx::vMapColor ( Point3GLub &  p )

inline

Map unique colors to indices.

Definition at line 84 of file Misc.hpp.

vMapColor() [2/2]

Point3GLub mgx::vMapColor ( uint  u )

inline

Map unique colors to indices.

Definition at line 77 of file Misc.hpp.

voxelEditGPU()

cuda_EXPORT int mgx::voxelEditGPU	(	const Point3i &	base,
		const Point3i &	size,
		const Point3i &	imgSize,
		const Point3f &	step,
		const Point3f &	shift,
		const Point3f &	p,
		const Point3f &	pz,
		float	radius,
		ushort	color,
		const Point3u &	clipDo,
		const HVec4F &	pn,
		HVecUS &	data
	)

worldToImage()

CU_HOST_DEVICE Point3i mgx::worldToImage	(	const Point3f &	wrld,
		const Point3f &	step,
		const Point3f &	shift
	)

Definition at line 425 of file Geometry.hpp.

writeAttr() [1/26]

bool mgx::writeAttr ( const BezierSurface::VertexData &  m, QByteArray &  ba  )

inline

Definition at line 98 of file BezierSurface.hpp.

writeAttr() [2/26]

bool mgx::writeAttr ( const CellAtlasConfig &  data, QByteArray &  ba  )

inline

Definition at line 215 of file RootCellProcessing.hpp.

writeAttr() [3/26]

bool mgx::writeAttr ( const CellAtlasData &  m, QByteArray &  ba  )

inline

Definition at line 149 of file RootCellProcessing.hpp.

writeAttr() [4/26]

template<>

bool mgx::writeAttr ( const CellCellPair &  w, QByteArray &  ba  )

inline

Definition at line 595 of file Attributes.hpp.

writeAttr() [5/26]

bool mgx::writeAttr ( const CellDivisionAttr &  m, QByteArray &  ba  )

inline

Definition at line 123 of file CellDivision.hpp.

writeAttr() [6/26]

template<>

bool mgx::writeAttr ( const Colorb &  color, QByteArray &  ba  )

inline

Definition at line 632 of file Attributes.hpp.

writeAttr() [7/26]

bool mgx::writeAttr ( const DivisionDataNew &  dd, QByteArray &  ba  )

inline

Definition at line 162 of file CellDivision.hpp.

writeAttr() [8/26]

bool mgx::writeAttr ( const HejnowiczSurface::VertexData &  m, QByteArray &  ba  )

inline

Serialize write for Vertex data.

Definition at line 193 of file HejnowiczSurface.hpp.

writeAttr() [9/26]

template<size_t n, size_t m, typename T >

bool mgx::writeAttr	(	const Matrix< n, m, T > &	data,
		QByteArray &	ba
	)

Definition at line 516 of file Attributes.hpp.

writeAttr() [10/26]

bool mgx::writeAttr ( const MeinhardtAI::CellData &  m, QByteArray &  ba  )

inline

Definition at line 237 of file DynamXProcessMorphogens.hpp.

writeAttr() [11/26]

bool mgx::writeAttr ( const PolarSurface::VertexData &  m, QByteArray &  ba  )

inline

Definition at line 119 of file PolarSurface.hpp.

writeAttr() [12/26]

template<>

bool mgx::writeAttr ( const QByteArray &  qba, QByteArray &  ba  )

inline

Definition at line 623 of file Attributes.hpp.

writeAttr() [13/26]

template<>

bool mgx::writeAttr ( const QString &  s, QByteArray &  ba  )

inline

Definition at line 602 of file Attributes.hpp.

writeAttr() [14/26]

template<>

bool mgx::writeAttr ( const QStringList &  s, QByteArray &  ba  )

inline

Definition at line 612 of file Attributes.hpp.

writeAttr() [15/26]

bool mgx::writeAttr ( const Solver::EdgData &  m, QByteArray &  ba  )

inline

Definition at line 193 of file Solver.hpp.

writeAttr() [16/26]

bool mgx::writeAttr ( const Solver::VtxData &  m, QByteArray &  ba  )

inline

Definition at line 183 of file Solver.hpp.

writeAttr() [17/26]

template<typename KeyT , typename ValueT >

bool mgx::writeAttr	(	const std::map< KeyT, ValueT > &	data,
		QByteArray &	ba
	)

Definition at line 655 of file Attributes.hpp.

writeAttr() [18/26]

template<typename T , typename U >

bool mgx::writeAttr	(	const std::pair< T, U > &	data,
		QByteArray &	ba
	)

Definition at line 540 of file Attributes.hpp.

writeAttr() [19/26]

template<typename T >

bool mgx::writeAttr	(	const std::vector< T > &	data,
		QByteArray &	ba
	)

Definition at line 641 of file Attributes.hpp.

writeAttr() [20/26]

template<>

bool mgx::writeAttr ( const SymmetricTensor &  data, QByteArray &  ba  )

inline

Definition at line 548 of file Attributes.hpp.

writeAttr() [21/26]

template<typename T >

bool mgx::writeAttr	(	const T &	data,
		QByteArray &	ba
	)

Write the attribute value from a QByteArray.

Definition at line 510 of file Attributes.hpp.

writeAttr() [22/26]

template<>

bool mgx::writeAttr ( const Triangle &  t, QByteArray &  ba  )

inline

Definition at line 574 of file Attributes.hpp.

writeAttr() [23/26]

template<size_t n>

bool mgx::writeAttr	(	const Vector< n, Colorb > &	data,
		QByteArray &	ba
	)

Definition at line 531 of file Attributes.hpp.

writeAttr() [24/26]

template<size_t n, typename T >

bool mgx::writeAttr	(	const Vector< n, T > &	data,
		QByteArray &	ba
	)

Definition at line 525 of file Attributes.hpp.

writeAttr() [25/26]

template<>

bool mgx::writeAttr ( const vertex &  v, QByteArray &  ba  )

inline

Definition at line 555 of file Attributes.hpp.

writeAttr() [26/26]

template<>

bool mgx::writeAttr ( const VtxVtxPair &  e, QByteArray &  ba  )

inline

Definition at line 567 of file Attributes.hpp.

writeAttrMaps()

void mgx::writeAttrMaps	(	RootCellProcessing	rcp,
		CellAtlasAttr *	cellAtlasAttr,
		CellAtlasConfigAttr *	cellAtlasConfigAttr
	)

writeCsvFile()

bool mgx::writeCsvFile	(	QString	filename,
		QString	header,
		vector< vector< double > > &	data
	)

write a 2D array to a (csv) file

Parameters

filename	QString folder and name of file (make sure it is *.csv if you want a csv file)
header	QString the csv file header, first line, strings separated by commas
data	vector<vector<double> > the data

Variable Documentation

area2

T mgx::area2

Definition at line 237 of file Geometry.hpp.

c1

CU_HOST_DEVICE const const T mgx::c1

Definition at line 234 of file Geometry.hpp.

c2

CU_HOST_DEVICE const const T T mgx::c2

Definition at line 234 of file Geometry.hpp.

c3

CU_HOST_DEVICE const const T T T mgx::c3

Definition at line 235 of file Geometry.hpp.

cMap

mgx_EXPORT IntCellMap* mgx::cMap

dat

DivisionAnalysisData mgx::dat

Definition at line 24 of file DivisionAnalysis.hpp.

DEBUG

mgx_EXPORT bool mgx::DEBUG

factory_type

mgxPython_EXPORT PyTypeObject mgx::factory_type

glfuncs

mgx_EXPORT MGXOpenGLFunctions* mgx::glfuncs

nrml

mgx::nrml

Definition at line 240 of file Geometry.hpp.

process_type

mgxPython_EXPORT PyTypeObject mgx::process_type

SAMPLES

const int mgx::SAMPLES

Definition at line 23 of file PolarSurface.hpp.

vertex_counter

mgx_EXPORT size_t mgx::vertex_counter

Number used to enumerate the vertices of all types.

vMap

mgx_EXPORT IntVtxMap* mgx::vMap

Maps for saveId for vertices and cells, created when file is read Globals required for overloads of readAttr and writeAttr for custom types.