mgx::CellTissue Class Reference

#include <CellTissue.hpp>

Public Types
enum	DivAlg {   SHORTEST_WALL, CLOSEST_MID, CLOSEST_WALL, SHORTEST_DIR,   PREDEFINED_DIR }
	Type of cell division SHORTEST WALL : CLOSEST MID : take midpoints of all wall segments and check which one is the closest to the center vertex of the cell CLOSEST WALL : SHORTEST DIR : test various directions (through the cell center) and divide along the shortes dir PREDEFINED DIR : More...
enum	UpdGeom {   UPD_AREA, UPD_LENGTH, UPD_CENTER, UPD_NORMAL,   UPD_VOLUME, UPD_WALLSZ }
	Type of update to geoemtry. More...
typedef DistNhbd< vvGraph >	DistNhbdS
typedef DistNhbd< cellGraph >	DistNhbdC
typedef std::pair< int, int >	IntInt
	Create a 3D cellular tissue. More...
typedef std::pair< IntInt, double >	IntIntDouble

Public Member Functions
	CellTissue ()
const QString &	meshType ()
	Returns a reference to the mesh type. More...
const QString &	setMeshType (const QString &meshType)
int	viewLabel () const
	Returns the current label, without modifying it. More...
void	setLabel (int l)
	Sets the current label. More...
int	nextLabel ()
	Increment the current label and return. More...
bool	chkGraph (const vvGraph &S) const
	Check the graph for consistency. More...
void	updGeometry ()
	Set area, length of cell walls, center and normal. More...
void	updGeometry (int mode)
void	updGeometry (const cell &c)
	Set area, length of cell walls, center and normal. More...
void	updGeometry (const cell &c, int mode)
bool	hasCellGraph ()
bool	divideCell (const cell &c, Subdivide *sDiv, DivAlg divAlg=SHORTEST_WALL)
	Divide a cell. More...
bool	divideCell (const cell &c, Subdivide *sDiv, DivAlg divAlg, std::vector< Point3d > &nrmls)
	Divide a cell with a list of possible directions (only required for SHORTEST_DIR) More...
void	deleteCell (const cell &c)
	Delete a cell from the graph. More...
void	processParms (const QStringList &parms)
	Read the parameters for the cell tissue from MGX GUI. More...
void	processParmsDivide (const QStringList &parms)
bool	addCell (std::vector< vertex > poly)
	Add a cell to the mesh, the first position is the center. More...
bool	toMgxm ()
	Create a normal MorphoGraphX mesh (from any other type) More...
bool	toMgxc (double wallMax=0)
	Generate a simplified cell mesh (MGXC) from a normal (MGXM) one or from MGX2D. More...
bool	toMgx2d (double wallMax=0)
	Create a 2D cellular tissue, from MGXC. More...
bool	createTissueGraphs (vvGraph &cS, vvGraph &cJ, cellGraph &cC, double wallMax=0)
void	getNeighborhoodMap3D (std::map< IntInt, double > &neighborMap)
bool	toMgx3d (double tolerance=0, double neighborMinArea=0)
void	updateAllGraph ()
	Create/update all graph from 3D cell tissue (stored in S) More...
bool	loadCellTissueFromText (const QString &fileName)
	See if mesh is a cell mesh (MGXM), and if so, correct the vertex types. More...
bool	saveCellTissueToText (const QString &fileName)
	Save cell mesh from a text file. More...
cell	getCell (vertex v)
	Return a vertex from the cell. More...
vertex	getVtx (cell c)
	Return a vertex from the cell. More...
bool	assocCellVertex (vertex &v, cell &m)

Static Public Member Functions
static DivAlg	stringToDivAlg (const QString &s)
	Map a string to the enum. More...

Public Attributes
vvGraph	S
vvGraph	J
cellGraph	C
DistNhbdS	nhbdS
DistNhbdC	nhbdC
float	CellMaxArea
DivAlg	CellDivAlg

Detailed Description

Definition at line 46 of file CellTissue.hpp.

Member Typedef Documentation

DistNhbdC

typedef DistNhbd<cellGraph> mgx::CellTissue::DistNhbdC

Definition at line 71 of file CellTissue.hpp.

DistNhbdS

typedef DistNhbd<vvGraph> mgx::CellTissue::DistNhbdS

Definition at line 69 of file CellTissue.hpp.

IntInt

typedef std::pair<int, int> mgx::CellTissue::IntInt

Create a 3D cellular tissue.

Definition at line 190 of file CellTissue.hpp.

IntIntDouble

typedef std::pair<IntInt, double> mgx::CellTissue::IntIntDouble

Definition at line 191 of file CellTissue.hpp.

Member Enumeration Documentation

DivAlg

enum mgx::CellTissue::DivAlg

Type of cell division SHORTEST WALL : CLOSEST MID : take midpoints of all wall segments and check which one is the closest to the center vertex of the cell CLOSEST WALL : SHORTEST DIR : test various directions (through the cell center) and divide along the shortes dir PREDEFINED DIR :

Enumerator
SHORTEST_WALL
CLOSEST_MID
CLOSEST_WALL
SHORTEST_DIR
PREDEFINED_DIR

Definition at line 57 of file CellTissue.hpp.

UpdGeom

enum mgx::CellTissue::UpdGeom

Type of update to geoemtry.

Enumerator
UPD_AREA
UPD_LENGTH
UPD_CENTER
UPD_NORMAL
UPD_VOLUME
UPD_WALLSZ

Definition at line 62 of file CellTissue.hpp.

Constructor & Destructor Documentation

CellTissue()

mgx::CellTissue::CellTissue ( )

inline

Definition at line 75 of file CellTissue.hpp.

Member Function Documentation

addCell()

bool mgx::CellTissue::addCell

(

std::vector< vertex >

poly

)

Add a cell to the mesh, the first position is the center.

assocCellVertex()

bool mgx::CellTissue::assocCellVertex ( vertex &  v, cell &  m  )

inline

Definition at line 236 of file CellTissue.hpp.

chkGraph()

bool mgx::CellTissue::chkGraph

(

const vvGraph &

S

)

const

Check the graph for consistency.

createTissueGraphs()

bool mgx::CellTissue::createTissueGraphs	(	vvGraph &	cS,
		vvGraph &	cJ,
		cellGraph &	cC,
		double	wallMax = 0
	)

deleteCell()

void mgx::CellTissue::deleteCell

(

const cell &

c

)

Delete a cell from the graph.

divideCell() [1/2]

bool mgx::CellTissue::divideCell	(	const cell &	c,
		Subdivide *	sDiv,
		DivAlg	divAlg,
		std::vector< Point3d > &	nrmls
	)

Divide a cell with a list of possible directions (only required for SHORTEST_DIR)

divideCell() [2/2]

bool mgx::CellTissue::divideCell	(	const cell &	c,
		Subdivide *	sDiv,
		DivAlg	divAlg = SHORTEST_WALL
	)

Divide a cell.

getCell()

cell mgx::CellTissue::getCell ( vertex  v )

inline

Return a vertex from the cell.

Definition at line 218 of file CellTissue.hpp.

getNeighborhoodMap3D()

void mgx::CellTissue::getNeighborhoodMap3D

(

std::map< IntInt, double > &

neighborMap

)

getVtx()

vertex mgx::CellTissue::getVtx ( cell  c )

inline

Return a vertex from the cell.

Definition at line 229 of file CellTissue.hpp.

hasCellGraph()

bool mgx::CellTissue::hasCellGraph

(

)

loadCellTissueFromText()

bool mgx::CellTissue::loadCellTissueFromText

(

const QString &

fileName

)

See if mesh is a cell mesh (MGXM), and if so, correct the vertex types.

Read cell mesh from a text file.

meshType()

const QString& mgx::CellTissue::meshType ( )

inline

Returns a reference to the mesh type.

Types: MGXM - normal mesh MGXC - cell mesh MGX2D - cell mesh plus cell graph MGX3D - 3D cellular mesh

Definition at line 91 of file CellTissue.hpp.

nextLabel()

int mgx::CellTissue::nextLabel ( )

inline

Increment the current label and return.

Definition at line 108 of file CellTissue.hpp.

processParms()

void mgx::CellTissue::processParms

(

const QStringList &

parms

)

Read the parameters for the cell tissue from MGX GUI.

processParmsDivide()

void mgx::CellTissue::processParmsDivide

(

const QStringList &

parms

)

saveCellTissueToText()

bool mgx::CellTissue::saveCellTissueToText

(

const QString &

fileName

)

Save cell mesh from a text file.

setLabel()

void mgx::CellTissue::setLabel ( int  l )

inline

Sets the current label.

Definition at line 103 of file CellTissue.hpp.

setMeshType()

const QString& mgx::CellTissue::setMeshType

(

const QString &

meshType

)

stringToDivAlg()

static DivAlg mgx::CellTissue::stringToDivAlg ( const QString &  s )

inlinestatic

Map a string to the enum.

Definition at line 131 of file CellTissue.hpp.

toMgx2d()

bool mgx::CellTissue::toMgx2d

(

double

wallMax = 0

)

Create a 2D cellular tissue, from MGXC.

toMgx3d()

bool mgx::CellTissue::toMgx3d	(	double	tolerance = 0,
		double	neighborMinArea = 0
	)

toMgxc()

bool mgx::CellTissue::toMgxc

(

double

wallMax = 0

)

Generate a simplified cell mesh (MGXC) from a normal (MGXM) one or from MGX2D.

toMgxm()

bool mgx::CellTissue::toMgxm

(

)

Create a normal MorphoGraphX mesh (from any other type)

updateAllGraph()

void mgx::CellTissue::updateAllGraph

(

)

Create/update all graph from 3D cell tissue (stored in S)

updGeometry() [1/4]

void mgx::CellTissue::updGeometry ( )

inline

Set area, length of cell walls, center and normal.

Definition at line 118 of file CellTissue.hpp.

updGeometry() [2/4]

void mgx::CellTissue::updGeometry ( const cell &  c )

inline

Set area, length of cell walls, center and normal.

Definition at line 124 of file CellTissue.hpp.

updGeometry() [3/4]

void mgx::CellTissue::updGeometry	(	const cell &	c,
		int	mode
	)

updGeometry() [4/4]

void mgx::CellTissue::updGeometry

(

int

mode

)

viewLabel()

int mgx::CellTissue::viewLabel ( ) const

inline

Returns the current label, without modifying it.

Definition at line 98 of file CellTissue.hpp.

Member Data Documentation

C

cellGraph mgx::CellTissue::C

Definition at line 66 of file CellTissue.hpp.

CellDivAlg

DivAlg mgx::CellTissue::CellDivAlg

Definition at line 248 of file CellTissue.hpp.

CellMaxArea

float mgx::CellTissue::CellMaxArea

Definition at line 247 of file CellTissue.hpp.

J

vvGraph mgx::CellTissue::J

Definition at line 65 of file CellTissue.hpp.

nhbdC

DistNhbdC mgx::CellTissue::nhbdC

Definition at line 72 of file CellTissue.hpp.

nhbdS

DistNhbdS mgx::CellTissue::nhbdS

Definition at line 70 of file CellTissue.hpp.

S

vvGraph mgx::CellTissue::S

Definition at line 64 of file CellTissue.hpp.

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The documentation for this class was generated from the following file:

• src/CellTissue.hpp