Download the CNN package from here:
https://bitbucket.org/jstegmaier/cellsegmentation/src/master/

Put it in your home directory and rename the main directory to JStegmaierCellSegmentation, or put it anywhere you like and change the path in the parameter for the "Stack/CCN/Unet3D Prediction" process

Inside this directory install the CNN package from the instructions, which mostly means download Anaconda and create the conda environment:

From ~/JStegmaierCellSegmentation:
$ conda env create -f environment_linux.yml

By default this will be put in your home directory anaconda3. Again, if you put it somewhere else you will need to change the parameter in the process.

