Publications

If you use MorphoGraphX in your work, please let us know about your publication, and we’ll add your article here.

  • 2021

    • Vijayan, A., Tofanelli, R., Strauss, S., Cerrone, L., Wolny, A., Strohmeier, J., Kreshuk, A., Hamprecht, F.A., Smith, R.S. and Schneitz, K., 2021. A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule. Elife, 10, p.e63262. 10.7554/eLife.63262
  • 2020

    • Natonik-Białoń, S., Borowska-Wykręt, D., Mosca, G., Grelowski, M., Wrzalik, R., Smith, R.S. and Kwiatkowska, D., 2020. Deformation of a cell monolayer due to osmotic treatment: a case study of onion scale epidermis. Botany, 98(1), pp.21-36. https://doi.org/10.1139/cjb-2019-0027
    • Smith, S.J., Davidson, L.A., and Rebeiz, M, 2020. Evolutionary expansion of apical extracellular matrix is required for the elongation of cells in a novel structure. eLife 9:e55965. 10.7554/eLife.55965
    • Aryal, B., Jonsson, K., Baral, A., Sancho-Andres, G., Routier-Kierzkowska, A.L., Kierzkowski, D. and Bhalerao, R.P., 2020. Interplay between cell wall and auxin mediates the control of differential cell elongation during apical hook development. Current Biology, 30(9), pp.1733-1739.e3. https://doi.org/10.1016/j.cub.2020.02.055
    • Zhang, Z., Runions, A., Mentink, R.A., Kierzkowski, D., Karady, M., Hashemi, B., Huijser, P., Strauss, S., Gan, X., Ljung, K. and Tsiantis, M., 2020. A WOX/Auxin Biosynthesis Module Controls Growth to Shape Leaf Form. Current Biology. https://doi.org/10.1016/j.cub.2020.09.037
    • Dong, Y., Majda, M., Šimura, J., Horvath, R., Srivastava, A.K., Łangowski, Ł., Eldridge, T., Stacey, N., Slotte, T., Sadanandom, A., Smith, R.S. and Ljung, K., 2020. HEARTBREAK Controls Post-translational Modification of INDEHISCENT to Regulate Fruit Morphology in Capsella. Current Biology, 30(19), pp.3880-3888. https://doi.org/10.1016/j.cub.2020.07.055
    • Kinoshita, A., Vayssières, A., Richter, R., Sang, Q., Roggen, A., van Driel, A.D., Smith, R.S. and Coupland, G., 2020. Regulation of shoot meristem shape by photoperiodic signaling and phytohormones during floral induction of Arabidopsis. eLife9, p.e60661. 10.7554/eLife.60661

  • 2019

    • Kirchhelle, C., Garcia-Gonzalez, D., Irani, N.G., Jérusalem, A. and Moore, I., 2019. Two mechanisms regulate directional cell growth in Arabidopsis lateral roots. Elife, 8, p.e47988. 10.7554/eLife.47988
    • Jackson, M.D., Duran-Nebreda, S., Kierzkowski, D., Strauss, S., Xu, H., Landrein, B., Hamant, O., Smith, R.S., Johnston, I.G. and Bassel, G.W., 2019. Global topological order emerges through local mechanical control of cell divisions in the Arabidopsis shoot apical meristem. Cell systems, 8(1), pp.53-65. https://doi.org/10.1016/j.cels.2018.12.009
    • Yoshida, S., Van Der Schuren, A., Van Dop, M., Van Galen, L., Saiga, S., Adibi, M., Möller, B., Colette, A., Marhavy, P., Smith, R. and Friml, J., 2019. A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis. Nature plants, 5(2), pp.160-166. https://doi.org/10.1038/s41477-019-0363-6
    • Kierzkowski, D., Runions, A., Vuolo, F., Strauss, S., Lymbouridou, R., Routier-Kierzkowska, A.L., Wilson-Sánchez, D., Jenke, H., Galinha, C., Mosca, G., Zhang, Z. and Smith, R.S, 2019. A growth-based framework for leaf shape development and diversity. Cell, 177(6), pp.1405-1418. https://doi.org/10.1016/j.cell.2019.05.011
  • 2018

    • Chakrabortty, B., Blilou, I., Scheres, B. and Mulder, B.M., 2018. A computational framework for cortical microtubule dynamics in realistically shaped plant cells. PLoS computational biology, 14(2), p.e1005959. https://doi.org/10.1371/journal.pcbi.1005959
    • Feng, W., Kita, D., Peaucelle, A., Cartwright, H.N., Doan, V., Duan, Q., Liu, M.C., Maman, J., Steinhorst, L., Schmitz-Thom, I. and Yvon, R., 2018. The FERONIA receptor kinase maintains cell-wall integrity during salt stress through Ca2+ signaling. Current Biology, 28(5), pp.666-675. https://doi.org/10.1016/j.cub.2018.01.023

  • 2017

    • Kiss, A., Moreau, T., Mirabet, V., Calugaru, C.I., Boudaoud, A. and Das, P., 2017. Segmentation of 3D images of plant tissues at multiple scales using the level set method. Plant methods, 13(1), p.114. https://doi.org/10.1186/s13007-017-0264-5
    • Hervieux, N., Tsugawa, S., Fruleux, A., Dumond, M., Routier-Kierzkowska, A.L., Komatsuzaki, T., Boudaoud, A., Larkin, J.C., Smith, R.S., Li, C.B. and Hamant, O., 2017. Mechanical shielding of rapidly growing cells buffers growth heterogeneity and contributes to organ shape reproducibility. Current Biology, 27(22), pp.3468-3479. https://doi.org/10.1016/j.cub.2017.10.033
    • Tsugawa, S., Hervieux, N., Kierzkowski, D., Routier-Kierzkowska, A.L., Sapala, A., Hamant, O., Smith, R.S., Roeder, A.H., Boudaoud, A. and Li, C.B., 2017. Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals. Development, 144(23), pp.4398-4405. https://doi.org/10.1242/dev.153999
    • Bringmann, M. and Bergmann, D.C., 2017. Tissue-wide mechanical forces influence the polarity of stomatal stem cells in Arabidopsis. Current Biology, 27(6), pp.877-883. https://doi.org/10.1016/j.cub.2017.01.059
  • 2016

    • Kirchhelle, C., Chow, C.M., Foucart, C., Neto, H., Stierhof, Y.D., Kalde, M., Walton, C., Fricker, M., Smith, R.S., Jérusalem, A. and Irani, N., 2016. The specification of geometric edges by a plant Rab GTPase is an essential cell-patterning principle during organogenesis in Arabidopsis. Developmental cell, 36(4), pp.386-400. https://doi.org/10.1016/j.devcel.2016.01.020
    • Hervieux, N., Dumond, M., Sapala, A., Routier-Kierzkowska, A.L., Kierzkowski, D., Roeder, A.H., Smith, R.S., Boudaoud, A. and Hamant, O., 2016. A mechanical feedback restricts sepal growth and shape in Arabidopsis. Current Biology, 26(8), pp.1019-1028. https://doi.org/10.1016/j.cub.2016.03.004
    • Louveaux, M., Julien, J.D., Mirabet, V., Boudaoud, A. and Hamant, O., 2016. Cell division plane orientation based on tensile stress in Arabidopsis thaliana. Proceedings of the National Academy of Sciences, 113(30), pp.E4294-E4303. https://doi.org/10.1073/pnas.1600677113
    • Hofhuis, H., Moulton, D., Lessinnes, T., Routier-Kierzkowska, A.L., Bomphrey, R.J., Mosca, G., Reinhardt, H., Sarchet, P., Gan, X., Tsiantis, M. and Ventikos, Y., 2016. Morphomechanical innovation drives explosive seed dispersal. Cell, 166(1), pp.222-233. https://doi.org/10.1016/j.cell.2016.05.002
    • Hong, L., Dumond, M., Tsugawa, S., Sapala, A., Routier-Kierzkowska, A.L., Zhou, Y., Chen, C., Kiss, A., Zhu, M., Hamant, O. and Smith, R.S., 2016. Variable cell growth yields reproducible organ development through spatiotemporal averaging. Developmental cell, 38(1), pp.15-32. https://doi.org/10.1016/j.devcel.2016.06.016
    • Scheuring, D., Löfke, C., Krüger, F., Kittelmann, M., Eisa, A., Hughes, L., Smith, R.S., Hawes, C., Schumacher, K. and Kleine-Vehn, J., 2016. Actin-dependent vacuolar occupancy of the cell determines auxin-induced growth repression. Proceedings of the National Academy of Sciences, 113(2), pp.452-457. https://doi.org/10.1073/pnas.1517445113
  • 2015

    • Barbier de Reuille, P., Routier-Kierzkowska, A.-L., Kierzkowski, D., Bassel, G.W., Schüpbach, T., Tauriello, G., Bajpai, N., Strauss, S., Weber, A., Kiss, A., Burian, A., Hofhuis, H., Sapala, A., Lipowczan, M., Heimlicher M.B., Robinson, S., Bayer, E.M., Basler, K., Koumoutsakos, P., Roeder, A.H.K., Aegerter-Wilmsen, T., Nakayama, N., Tsiantis, M., Hay, A., Kwiatkowska, D., Xenarios, I., Kuhlemeier, C. & Smith, R.S. (2015) MorphoGraphX: A platform for quantifying morphogenesis in 4D. eLife 4:e05864. http://dx.doi.org/10.7554/eLife.05864
    • Montenegro-Johnson, T. D., Stamm, P., Strauss, S., Topham, A. T., Tsagris, M., Wood, A. T., Smith, R.S. & Bassel, G. W. (2015). Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas. The Plant Cell 27(4), 1018-1033. http://dx.doi.org/10.1105/tpc.15.00175
    • Shapiro, B. E., Tobin, C., Mjolsness, E., & Meyerowitz, E. M. (2015). Analysis of cell division patterns in the Arabidopsis shoot apical meristem. PNAS, 112(15), 4815-4820. http://dx.doi.org/10.1073/pnas.1502588112
  • 2014

    • De Rybel, B., Adibi, M., Breda, A. S., Wendrich, J. R., Smit, M. E., Novák, O., Yamaguchi, N., Yoshida, S., Van Isterdael, G., Palovaara, J., Nijsse, B.,Boekschoten, M.V.,Hooiveld, G., Beeckman, T., Wagner, D., Ljung, K., Fleck, C.  & Weijers, D. (2014). Integration of growth and patterning during vascular tissue formation in Arabidopsis. Science, 345(6197), 1255215. http://dx.doi.org/10.1126/science.1255215
    • Bassel, G. W., Stamm, P., Mosca, G., Barbier de Reuille, P., Gibbs, D. J., Winter, R., Janka, Holdsworth, M. J. & Smith, R. S. (2014). Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo. PNAS, 201404616. http://dx.doi.org/10.1073/pnas.1404616111
    • Yoshida, S., Barbier de Reuille, P., Lane, B., Bassel, G. W., Prusinkiewicz, P., Smith, R. S., & Weijers, D. (2014). Genetic Control of Plant Development by Overriding a Geometric Division Rule. Developmental cell, 29(1), 75-87. http://dx.doi.org/10.1016/j.devcel.2014.02.002
    • Sampathkumar, A., Krupinski, P., Wightman, R., Milani, P., Berquand, A., Boudaoud, A., Hamant, O., Jonsonn, E., & Meyerowitz, E. M. (2014). Subcellular and supracellular mechanical stress prescribes cytoskeleton behavior in Arabidopsis cotyledon pavement cells. ELife, 3. http://dx.doi.org/10.7554/eLife.01967
    • Vlad, D., Kierzkowski, D., Rast, M. I., Vuolo, F., Ioio, R. D., Galinha, C., Gan X., Hajheidari M., Hay A., Smith R. S., Huijser P., Bailey C. D., & Tsiantis, M. (2014). Leaf Shape Evolution Through Duplication, Regulatory Diversification, and Loss of a Homeobox Gene. Science, 343(6172), 780-783. http://dx.doi.org/10.1126/science.1248384
    • Barbier de Reuille, P., Robinson, S., & Smith, R. S. (2014). Quantifying Cell Shape and Gene Expression in the Shoot Apical Meristem Using MorphoGraphX. In Plant Cell Morphogenesis (pp. 121-134). Humana Press. http://dx.doi.org/10.1007/978-1-62703-643-6_10

  • 2013

    • Bert De Rybel B; Möller B; Yoshida S; Grabowicz I; Barbier de Reuille P; Boeren S, Smith RS; Borst JW; Weijers D (2013). A bHLH Complex Controls Embryonic Vascular Tissue Establishment and Indeterminate Growth in Arabidopsis. Developmental Cell. 24(4): 426-437. http://dx.doi.org/10.1016/j.devcel.2012.12.013
    • Wabnik, K., Robert, H. S., Smith, R. S., & Friml, J. (2013). Modeling framework for the establishment of the apical-basal embryonic axis in plants. Current Biology, 23(24), 2513-2518. http://dx.doi.org/10.1016/j.cub.2013.10.038
  • 2012

    • Nakayama, N., Smith, R. S., Mandel, T., Robinson, S., Kimura, S., Boudaoud, A., & Kuhlemeier, C. (2012). Mechanical regulation of auxin-mediated growth. Current Biology, 22(16), 1468-1476. http://dx.doi.org/10.1016/j.cub.2012.06.050
    • Kierzkowski, D., Nakayama, N., Routier-Kierzkowska, A. L., Weber, A., Bayer, E., Schorderet, M., Reinhardt, D., Kuhlemeier, C. & Smith, R. S. (2012). Elastic domains regulate growth and organogenesis in the plant shoot apical meristem. Science, 335(6072), 1096-1099. http://dx.doi.org/10.1126/science.1213100
    • Aegerter-Wilmsen, T., Heimlicher, M. B., Smith, A. C., de Reuille, P. B., Smith, R. S., Aegerter, C. M., & Basler, K. (2012). Integrating force-sensing and signaling pathways in a model for the regulation of wing imaginal disc size. Development, 139(17), 3221-3231. http://dx.doi.org/10.1242/dev.082800
    • Chitwood, D. H., Headland, L. R., Ranjan, A., Martinez, C. C., Braybrook, S. A., Koenig, D. P., Kuhlemeier, C., Smith, R. S. & Sinha, N. R. (2012). Leaf asymmetry as a developmental constraint imposed by auxin-dependent phyllotactic patterning. The Plant Cell Online, 24(6), 2318-2327. http://dx.doi.org/10.1105/tpc.112.098798
  • 2011

    • Santuari, L., Scacchi, E., Rodriguez-Villalon, A., Salinas, P., Dohmann, E., Brunoud, G., Vernoux, T., Smith, R.S. & Hardtke, C. S. (2011). Positional Information by Differential Endocytosis Splits Auxin Response to Drive Arabidopsis Root Meristem Growth. Current Biology, 21(22), 1918-1923. http://dx.doi.org/10.1016/j.cub.2011.10.002

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